Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   D1O36_RS03735 Genome accession   NZ_CP031881
Coordinates   674179..674472 (+) Length   97 a.a.
NCBI ID   WP_134973176.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST106     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 669179..679472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1O36_RS10615 - 670804..672480 (+) 1677 WP_246752691.1 DUF1524 domain-containing protein -
  D1O36_RS03725 (D1O36_03725) - 672473..673657 (+) 1185 WP_134973175.1 restriction endonuclease subunit S -
  D1O36_RS03730 (D1O36_03730) - 673871..674189 (+) 319 Protein_677 type II toxin-antitoxin system RelE/ParE family toxin -
  D1O36_RS03735 (D1O36_03735) HI0659 674179..674472 (+) 294 WP_134973176.1 helix-turn-helix transcriptional regulator Machinery gene
  D1O36_RS03740 (D1O36_03740) - 674494..676095 (+) 1602 WP_134973177.1 type I restriction-modification system subunit M -
  D1O36_RS03745 (D1O36_03745) - 676173..677060 (+) 888 Protein_680 Rpn family recombination-promoting nuclease/putative transposase -
  D1O36_RS03750 (D1O36_03750) - 677322..678323 (+) 1002 WP_134973556.1 DNA/RNA non-specific endonuclease -
  D1O36_RS03760 (D1O36_03760) - 678476..679036 (+) 561 WP_134973179.1 LemA family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10774.49 Da        Isoelectric Point: 5.8962

>NTDB_id=312331 D1O36_RS03735 WP_134973176.1 674179..674472(+) (HI0659) [Streptococcus thermophilus strain ST106]
MKNSAIGSNWKDVRSELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQERV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=312331 D1O36_RS03735 WP_134973176.1 674179..674472(+) (HI0659) [Streptococcus thermophilus strain ST106]
ATGAAGAATAGTGCCATCGGTAGCAATTGGAAAGATGTGAGATCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TCTACGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGACATGAAAAGGGCATTAGTCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGATACGGTTTTGAAAGTCTTA
GCTAGTCTGGGCAAGACTCTCGCTGTCGTCCCACTGGAACAAGAAAGGGTCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567

Multiple sequence alignment