Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   D1O36_RS02250 Genome accession   NZ_CP031881
Coordinates   400291..400734 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST106     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 395291..405734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1O36_RS02230 (D1O36_02230) - 395812..396564 (-) 753 WP_011226910.1 NUDIX hydrolase -
  D1O36_RS02235 (D1O36_02235) - 396628..397734 (-) 1107 WP_011225557.1 AAA family ATPase -
  D1O36_RS02240 (D1O36_02240) gdhA 398078..399430 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  D1O36_RS02245 (D1O36_02245) - 399689..400099 (+) 411 WP_011225559.1 peptide deformylase -
  D1O36_RS02250 (D1O36_02250) rcrR 400291..400734 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  D1O36_RS02255 (D1O36_02255) rcrP 400738..402552 (+) 1815 WP_014727346.1 ABC transporter ATP-binding protein Regulator
  D1O36_RS02260 (D1O36_02260) rcrQ 402542..404320 (+) 1779 WP_134973097.1 ABC transporter ATP-binding protein Regulator
  D1O36_RS02265 (D1O36_02265) - 404476..404847 (+) 372 WP_041829277.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=312321 D1O36_RS02250 WP_002945408.1 400291..400734(+) (rcrR) [Streptococcus thermophilus strain ST106]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=312321 D1O36_RS02250 WP_002945408.1 400291..400734(+) (rcrR) [Streptococcus thermophilus strain ST106]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment