Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ECB_RS02215 Genome accession   NC_012967
Coordinates   466472..467077 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli B str. REL606     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 461472..472077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECB_RS02185 (ECB_00417) rsmS 462177..462338 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  ECB_RS02190 (ECB_00418) priC 462352..462879 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  ECB_RS02195 (ECB_00419) ybaN 462949..463326 (+) 378 WP_001188905.1 DUF454 family protein -
  ECB_RS02200 (ECB_00420) apt 463479..464030 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ECB_RS02205 (ECB_00421) dnaX 464159..466090 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  ECB_RS02210 (ECB_00422) ybaB 466143..466472 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ECB_RS02215 (ECB_00423) recR 466472..467077 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ECB_RS02220 (ECB_00424) htpG 467187..469061 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  ECB_RS02225 (ECB_00425) adk 469242..469886 (+) 645 WP_001220233.1 adenylate kinase -
  ECB_RS02230 (ECB_00426) hemH 470122..471084 (+) 963 WP_001250117.1 ferrochelatase -
  ECB_RS02235 (ECB_00427) aes 471081..472040 (-) 960 WP_000801849.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=31231 ECB_RS02215 WP_001195025.1 466472..467077(+) (recR) [Escherichia coli B str. REL606]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=31231 ECB_RS02215 WP_001195025.1 466472..467077(+) (recR) [Escherichia coli B str. REL606]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443