Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | D1095_RS04335 | Genome accession | NZ_CP031875 |
| Coordinates | 976326..976772 (-) | Length | 148 a.a. |
| NCBI ID | WP_005597397.1 | Uniprot ID | B0BPG5 |
| Organism | Actinobacillus pleuropneumoniae serovar 2 str. S1536 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 971326..981772
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1095_RS04310 (D1095_04375) | yacG | 972233..972421 (-) | 189 | WP_005597388.1 | DNA gyrase inhibitor YacG | - |
| D1095_RS04315 (D1095_04380) | coaE | 972403..973041 (-) | 639 | WP_005601202.1 | dephospho-CoA kinase | - |
| D1095_RS04320 (D1095_04385) | - | 973063..973701 (-) | 639 | WP_005604550.1 | prepilin peptidase | - |
| D1095_RS04325 (D1095_04390) | pilC | 973728..974930 (-) | 1203 | WP_005601207.1 | type II secretion system F family protein | Machinery gene |
| D1095_RS04330 (D1095_04395) | pilB | 974914..976308 (-) | 1395 | WP_005601209.1 | GspE/PulE family protein | Machinery gene |
| D1095_RS04335 (D1095_04400) | pilA | 976326..976772 (-) | 447 | WP_005597397.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| D1095_RS04340 (D1095_04405) | radA | 976954..978333 (+) | 1380 | WP_005601211.1 | DNA repair protein RadA | Machinery gene |
| D1095_RS04345 (D1095_04410) | - | 978377..978610 (-) | 234 | WP_005597399.1 | YgjV family protein | - |
| D1095_RS04350 (D1095_04415) | folA | 978737..979225 (-) | 489 | WP_005597400.1 | type 3 dihydrofolate reductase | - |
| D1095_RS04355 (D1095_04420) | proB | 979312..980403 (+) | 1092 | WP_005601213.1 | glutamate 5-kinase | - |
| D1095_RS04360 (D1095_04425) | - | 980416..981192 (+) | 777 | WP_005601215.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15980.38 Da Isoelectric Point: 7.6257
>NTDB_id=312286 D1095_RS04335 WP_005597397.1 976326..976772(-) (pilA) [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
Nucleotide
Download Length: 447 bp
>NTDB_id=312286 D1095_RS04335 WP_005597397.1 976326..976772(-) (pilA) [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
68.919 |
100 |
0.689 |
| pilA | Haemophilus influenzae 86-028NP |
55.102 |
99.324 |
0.547 |
| pilA | Haemophilus influenzae Rd KW20 |
53.061 |
99.324 |
0.527 |