Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   E3165_RS17970 Genome accession   NZ_CP038336
Coordinates   3518055..3518684 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli O157:H7 strain LSU61     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3513055..3523684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3165_RS17955 (E3165_18415) helD 3513297..3515351 (-) 2055 WP_001301436.1 DNA helicase IV -
  E3165_RS17960 (E3165_18420) yccF 3515474..3515920 (+) 447 WP_001261230.1 YccF domain-containing protein -
  E3165_RS17965 (E3165_18425) yccS 3515930..3518092 (+) 2163 WP_000875023.1 YccS family putative transporter -
  E3165_RS17970 (E3165_18430) sxy/tfoX 3518055..3518684 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  E3165_RS17975 (E3165_18435) sulA 3518903..3519412 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  E3165_RS17980 (E3165_18440) ompA 3519769..3520809 (+) 1041 WP_000750416.1 porin OmpA -
  E3165_RS17985 (E3165_18445) matP 3520885..3521337 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  E3165_RS17990 (E3165_18450) ycbZ 3521523..3523283 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=312220 E3165_RS17970 WP_000839153.1 3518055..3518684(-) (sxy/tfoX) [Escherichia coli O157:H7 strain LSU61]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=312220 E3165_RS17970 WP_000839153.1 3518055..3518684(-) (sxy/tfoX) [Escherichia coli O157:H7 strain LSU61]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1