Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ECBD_RS22470 Genome accession   NC_012947
Coordinates   4514344..4515336 (-) Length   330 a.a.
NCBI ID   WP_000224456.1    Uniprot ID   -
Organism   Escherichia coli 'BL21-Gold(DE3)pLysS AG'     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4509344..4520336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECBD_RS22460 (ECBD_4275) yieP 4512236..4512928 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  ECBD_RS22465 (ECBD_4276) mdtD 4512951..4514378 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  ECBD_RS22470 (ECBD_4277) cytR 4514344..4515336 (-) 993 WP_000224456.1 ribose operon transcriptional repressor RbsR Regulator
  ECBD_RS22475 (ECBD_4278) rbsK 4515340..4516269 (-) 930 WP_012767772.1 ribokinase -
  ECBD_RS22480 (ECBD_4279) rbsB 4516395..4517285 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ECBD_RS22485 (ECBD_4280) rbsC 4517310..4518275 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  ECBD_RS22490 (ECBD_4281) rbsA 4518280..4519785 (-) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  ECBD_RS22495 rbsD 4519793..4520047 (-) 255 Protein_4306 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36563.82 Da        Isoelectric Point: 5.0711

>NTDB_id=31222 ECBD_RS22470 WP_000224456.1 4514344..4515336(-) (cytR) [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGDSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=31222 ECBD_RS22470 WP_000224456.1 4514344..4515336(-) (cytR) [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTGATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCAACTCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361

Multiple sequence alignment