Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NGK_RS02755 Genome accession   NC_011035
Coordinates   519052..519714 (+) Length   220 a.a.
NCBI ID   WP_041421240.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae NCCP11945     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514052..524714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGK_RS02730 (NGK_0617) cysT 514228..515057 (-) 830 Protein_512 sulfate ABC transporter permease subunit CysT -
  NGK_RS02735 (NGK_0618) - 515243..515575 (+) 333 WP_003687908.1 hypothetical protein -
  NGK_RS02740 (NGK_0619) - 515905..516414 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NGK_RS02745 (NGK_0620) - 516646..517227 (-) 582 WP_003690895.1 superoxide dismutase -
  NGK_RS02750 (NGK_0622) dnaB 517391..518794 (+) 1404 WP_012503477.1 replicative DNA helicase -
  NGK_RS16520 - 518788..518900 (-) 113 Protein_517 IS5/IS1182 family transposase -
  NGK_RS02755 pilH 519052..519714 (+) 663 WP_041421240.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NGK_RS02760 (NGK_0624) pilI 519746..520360 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Machinery gene
  NGK_RS02765 (NGK_0625) pilJ 520357..521316 (+) 960 WP_012503480.1 PilW family protein Machinery gene
  NGK_RS02770 (NGK_0626) pilK 521295..521906 (+) 612 WP_012503481.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NGK_RS02775 (NGK_0627) pilL 521908..522381 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  NGK_RS02780 (NGK_0628) - 522451..522759 (-) 309 WP_003706588.1 AzlD family protein -
  NGK_RS02785 - 522756..523467 (-) 712 Protein_524 AzlC family ABC transporter permease -
  NGK_RS02790 (NGK_0631) dut 523633..524085 (+) 453 WP_003701071.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24496.91 Da        Isoelectric Point: 9.6166

>NTDB_id=31218 NGK_RS02755 WP_041421240.1 519052..519714(+) (pilH) [Neisseria gonorrhoeae NCCP11945]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGWGMLAFGDKNDNKAYDGDATDVFLRSVVLNDTDDSRINYTFNHIAFGSSQPKADRVVWTFNQNGTFGYLPD
QNLKNNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=31218 NGK_RS02755 WP_041421240.1 519052..519714(+) (pilH) [Neisseria gonorrhoeae NCCP11945]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATCGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTACACCTTCAATCATATCG
CTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

95.909

100

0.959

Multiple sequence alignment