Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | D1109_RS04190 | Genome accession | NZ_CP031858 |
| Coordinates | 903724..904272 (-) | Length | 182 a.a. |
| NCBI ID | WP_011848557.1 | Uniprot ID | A3N1S3 |
| Organism | Actinobacillus pleuropneumoniae strain A-85/14 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 898724..909272
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1109_RS04175 (D1109_04195) | - | 899206..899727 (+) | 522 | WP_193327846.1 | SprT family zinc-dependent metalloprotease | - |
| D1109_RS04180 (D1109_04200) | - | 899832..901118 (+) | 1287 | WP_005615681.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| D1109_RS04185 (D1109_04205) | - | 901310..903649 (-) | 2340 | WP_011848556.1 | Tex family protein | - |
| D1109_RS04190 (D1109_04210) | pilF | 903724..904272 (-) | 549 | WP_011848557.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| D1109_RS04195 (D1109_04215) | - | 904326..905507 (-) | 1182 | WP_009875290.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| D1109_RS04220 (D1109_04240) | gltX | 906411..907850 (+) | 1440 | WP_005605060.1 | glutamate--tRNA ligase | - |
| D1109_RS04230 (D1109_04250) | yefM | 908188..908439 (+) | 252 | WP_005598318.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| D1109_RS04235 (D1109_04255) | - | 908436..908696 (+) | 261 | WP_237611416.1 | Txe/YoeB family addiction module toxin | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20671.35 Da Isoelectric Point: 6.9479
>NTDB_id=311968 D1109_RS04190 WP_011848557.1 903724..904272(-) (pilF) [Actinobacillus pleuropneumoniae strain A-85/14]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKSRAAALR
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKSRAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=311968 D1109_RS04190 WP_011848557.1 903724..904272(-) (pilF) [Actinobacillus pleuropneumoniae strain A-85/14]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATTAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATTAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
67.021 |
100 |
0.692 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.784 |
93.956 |
0.44 |