Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   D1112_RS07175 Genome accession   NZ_CP031854
Coordinates   1574928..1575272 (+) Length   114 a.a.
NCBI ID   WP_012263215.1    Uniprot ID   B0BR00
Organism   Actinobacillus pleuropneumoniae strain ORG1224     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1569928..1580272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1112_RS07150 (D1112_07200) rpsL 1570061..1570435 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  D1112_RS07155 (D1112_07205) rfaC 1570557..1571516 (-) 960 WP_012263212.1 lipopolysaccharide heptosyltransferase RfaC -
  D1112_RS07160 (D1112_07210) waaF 1571591..1572628 (-) 1038 WP_012263213.1 lipopolysaccharide heptosyltransferase II -
  D1112_RS07165 (D1112_07215) - 1572710..1573114 (-) 405 WP_005599908.1 MliC family protein -
  D1112_RS07170 (D1112_07220) - 1573236..1574627 (-) 1392 WP_005605242.1 LysM-like peptidoglycan-binding domain-containing protein -
  D1112_RS07175 (D1112_07225) comEA/comE1 1574928..1575272 (+) 345 WP_012263215.1 ComEA family DNA-binding protein Machinery gene
  D1112_RS07180 (D1112_07230) asd 1575423..1576313 (+) 891 WP_005602033.1 archaetidylserine decarboxylase -
  D1112_RS07185 (D1112_07235) hsdR 1576430..1578772 (+) 2343 WP_012263216.1 EcoAI/FtnUII family type I restriction enzme subunit R -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12460.33 Da        Isoelectric Point: 10.2030

>NTDB_id=311902 D1112_RS07175 WP_012263215.1 1574928..1575272(+) (comEA/comE1) [Actinobacillus pleuropneumoniae strain ORG1224]
MKKFARFSISFIIALLSADSIAKPNNPPVSEPTPIVQQMTTTNKTADKQNQVNINTADAAEIKSKLVGIGEKKAQAIVDY
RTKNGAFITIEQLTEVSGIGKATLEKNRERITLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=311902 D1112_RS07175 WP_012263215.1 1574928..1575272(+) (comEA/comE1) [Actinobacillus pleuropneumoniae strain ORG1224]
ATGAAAAAATTTGCCCGATTTAGTATTAGCTTCATCATTGCATTGTTATCCGCCGATTCAATCGCAAAGCCTAATAATCC
GCCCGTTTCCGAACCGACTCCCATAGTTCAACAAATGACAACAACGAACAAAACTGCCGATAAACAAAATCAAGTGAATA
TCAATACGGCGGATGCAGCGGAAATTAAATCCAAACTGGTGGGAATCGGTGAGAAAAAAGCACAAGCGATTGTCGATTAC
CGCACTAAAAACGGTGCTTTTATTACGATAGAACAACTAACGGAAGTCTCCGGAATCGGTAAAGCGACACTAGAGAAAAA
TCGCGAACGCATCACGTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0BR00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.391

100

0.579
  comE1/comEA Haemophilus influenzae Rd KW20

46.154

91.228

0.421

Multiple sequence alignment