Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D1Y71_RS16555 Genome accession   NZ_CP031849
Coordinates   3250052..3250648 (-) Length   198 a.a.
NCBI ID   WP_023312915.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain 121     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3245052..3255648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1Y71_RS16540 (D1Y71_16645) helD 3245260..3247314 (-) 2055 WP_032414747.1 DNA helicase IV -
  D1Y71_RS16545 (D1Y71_16650) - 3247439..3247885 (+) 447 WP_002898425.1 YccF domain-containing protein -
  D1Y71_RS16550 (D1Y71_16655) yccS 3247903..3250038 (+) 2136 WP_002898422.1 YccS family putative transporter -
  D1Y71_RS16555 (D1Y71_16660) sxy/tfoX 3250052..3250648 (-) 597 WP_023312915.1 TfoX/Sxy family DNA transformation protein Regulator
  D1Y71_RS16565 (D1Y71_16670) sulA 3250997..3251506 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  D1Y71_RS16570 (D1Y71_16675) ompA 3251859..3252929 (+) 1071 WP_002898408.1 porin OmpA -
  D1Y71_RS16575 (D1Y71_16680) matP 3253061..3253513 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  D1Y71_RS16580 (D1Y71_16685) - 3253699..3255456 (+) 1758 WP_023312914.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22515.13 Da        Isoelectric Point: 10.2361

>NTDB_id=311876 D1Y71_RS16555 WP_023312915.1 3250052..3250648(-) (sxy/tfoX) [Klebsiella pneumoniae strain 121]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDNTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=311876 D1Y71_RS16555 WP_023312915.1 3250052..3250648(-) (sxy/tfoX) [Klebsiella pneumoniae strain 121]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATAATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment