Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HYN24_RS13690 Genome accession   NZ_CP031842
Coordinates   2846702..2847688 (-) Length   328 a.a.
NCBI ID   WP_117609767.1    Uniprot ID   A0A3B7A9J6
Organism   Dechloromonas sp. HYN0024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2841702..2852688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN24_RS13675 (HYN24_13675) - 2843514..2845163 (-) 1650 WP_240327681.1 FAD-dependent oxidoreductase -
  HYN24_RS13680 (HYN24_13680) ftsX 2845156..2846055 (-) 900 WP_117609765.1 permease-like cell division protein FtsX -
  HYN24_RS13685 (HYN24_13685) - 2846052..2846705 (-) 654 WP_117609766.1 cell division ATP-binding protein FtsE -
  HYN24_RS13690 (HYN24_13690) pilA 2846702..2847688 (-) 987 WP_117609767.1 signal recognition particle-docking protein FtsY Machinery gene
  HYN24_RS13695 (HYN24_13695) - 2847798..2849156 (+) 1359 WP_117609768.1 pitrilysin family protein -
  HYN24_RS13700 (HYN24_13700) - 2849169..2849573 (+) 405 WP_117609769.1 hypothetical protein -
  HYN24_RS13705 (HYN24_13705) - 2849570..2850859 (+) 1290 WP_117609770.1 pitrilysin family protein -
  HYN24_RS13710 (HYN24_13710) rsmD 2850863..2851417 (+) 555 WP_117609771.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HYN24_RS13715 (HYN24_13715) coaD 2851414..2851908 (+) 495 WP_117609772.1 pantetheine-phosphate adenylyltransferase -
  HYN24_RS13720 (HYN24_13720) - 2851929..2852186 (+) 258 WP_117609773.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 35656.04 Da        Isoelectric Point: 7.4373

>NTDB_id=311773 HYN24_RS13690 WP_117609767.1 2846702..2847688(-) (pilA) [Dechloromonas sp. HYN0024]
MFSFLKKSGTDTKADHKADVTAEAAAPSWRERLFKGLAKTRAQWGGKLKTIFSRGKVDDELLEELETLLLTSDCGIEATT
HLLDELKKAAKRDKLETPEAIQKALHDALLETLQPLEKPLDVSTHKPFVIMIAGVNGAGKTTSIGKLAKYFQSQGKSVLL
AAGDTFRAAAREQLETWGERNNVTVIAQDKGDPAAVVFDAISAAKARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIQKI
EPEGPHETLLVLDANIGQNALQQVKAFDKAINVTGLVLTKLDGTAKGGVVTAIARQCPKPIRFIGVGEQIDDLRPFSARD
FVDAMFEQ

Nucleotide


Download         Length: 987 bp        

>NTDB_id=311773 HYN24_RS13690 WP_117609767.1 2846702..2847688(-) (pilA) [Dechloromonas sp. HYN0024]
ATGTTCAGTTTCCTGAAAAAATCCGGCACCGACACCAAAGCCGATCACAAGGCCGACGTCACGGCTGAAGCGGCTGCTCC
CTCATGGCGCGAACGCCTCTTCAAGGGCCTGGCCAAGACCCGCGCCCAGTGGGGCGGCAAGCTCAAGACCATTTTCTCGC
GCGGCAAGGTCGACGACGAACTGCTCGAAGAACTGGAGACCCTCCTGCTGACGAGCGATTGCGGCATCGAGGCGACGACC
CACCTGCTCGACGAACTGAAAAAGGCCGCCAAGCGCGACAAGCTGGAAACGCCGGAGGCCATCCAGAAGGCACTTCACGA
CGCCCTGCTCGAAACCCTTCAGCCGCTCGAAAAGCCCCTCGATGTGTCGACCCACAAGCCTTTCGTGATCATGATTGCCG
GGGTTAACGGTGCCGGCAAGACGACGTCGATCGGCAAGCTAGCCAAGTATTTCCAGAGCCAGGGCAAGAGCGTCCTGCTC
GCAGCCGGCGACACTTTCCGGGCCGCTGCACGCGAACAACTGGAAACCTGGGGCGAACGCAACAATGTCACAGTGATTGC
TCAGGACAAGGGTGATCCGGCTGCTGTCGTCTTCGACGCCATTTCTGCCGCCAAGGCGCGTGGCATCGACATCGTGCTGG
CCGACACGGCCGGCCGTCTGCCGACGCAATTGCACCTCATGGAAGAAATCGCCAAGGTTCGCCGCGTCATCCAGAAAATC
GAGCCGGAAGGCCCGCACGAAACCCTCCTCGTCCTCGATGCCAACATCGGCCAGAACGCGCTCCAGCAGGTCAAGGCTTT
CGACAAGGCAATCAACGTTACCGGACTGGTCCTGACCAAGCTCGACGGTACGGCCAAGGGCGGCGTCGTCACGGCGATTG
CCCGGCAATGCCCGAAGCCGATCCGTTTCATCGGTGTCGGCGAACAGATCGACGACCTGCGGCCGTTTTCCGCCCGCGAC
TTCGTGGATGCAATGTTCGAGCAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(45-109)

SRP54-type protein, GTPase domain (SRP54)

(127-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7A9J6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

61.981

95.427

0.591

Multiple sequence alignment