Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HYN24_RS06940 Genome accession   NZ_CP031842
Coordinates   1467261..1468622 (+) Length   453 a.a.
NCBI ID   WP_117608569.1    Uniprot ID   A0A3B7A6R5
Organism   Dechloromonas sp. HYN0024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1462261..1473622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN24_RS06915 (HYN24_06915) rimI 1462471..1462932 (+) 462 WP_240327752.1 ribosomal protein S18-alanine N-acetyltransferase -
  HYN24_RS06920 (HYN24_06920) - 1462929..1463708 (+) 780 WP_117608566.1 uracil-DNA glycosylase family protein -
  HYN24_RS06925 (HYN24_06925) lplT 1463715..1464980 (-) 1266 WP_117608567.1 lysophospholipid transporter LplT -
  HYN24_RS15810 - 1465103..1465297 (-) 195 WP_162888630.1 hypothetical protein -
  HYN24_RS06930 (HYN24_06930) - 1465268..1466170 (+) 903 WP_117610239.1 LysR family transcriptional regulator -
  HYN24_RS06935 (HYN24_06935) alr 1466167..1467261 (+) 1095 WP_117608568.1 alanine racemase -
  HYN24_RS06940 (HYN24_06940) radA 1467261..1468622 (+) 1362 WP_117608569.1 DNA repair protein RadA Machinery gene
  HYN24_RS06945 (HYN24_06945) - 1468650..1470737 (+) 2088 WP_117608570.1 bifunctional diguanylate cyclase/phosphodiesterase -
  HYN24_RS06950 (HYN24_06950) - 1470734..1473223 (+) 2490 WP_240327753.1 ABC transporter permease -
  HYN24_RS06955 (HYN24_06955) - 1473220..1473618 (-) 399 WP_117608571.1 ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48473.00 Da        Isoelectric Point: 7.9380

>NTDB_id=311769 HYN24_RS06940 WP_117608569.1 1467261..1468622(+) (radA) [Dechloromonas sp. HYN0024]
MAKIKTIYSCTECGATSPKWQGQCPGCNDWNTLVETVADKAPTNSRFESLAPTAKLQNLSEIEAREVERIASGIGEFDRA
LGGGLVNGAVVLIGGDPGIGKSTLLLQALAHLSVANKVLYVSGEESGEQVALRARRLGLDTRRLQLMAEINLERILATLQ
AERPTVAVIDSIQTLWSDQLSSAPGSVAQVRECAAQLTRLAKQAGITVILVGHVTKEGALAGPRVLEHIVDTVLYFEGDT
HSSFRLVRAVKNRFGAVNELGVFAMTDKGLKGVNNPSALFLSQHGQDVAGSCVMVTQEGTRPLLVEIQALVDTSHGNPRR
LTVGLDPQRLAMLLAVLHRHAGIVCFDQDVFVNAVGGVKITEPAADLAVLLSITSSLKNKPLPSKLIVFGEIGLAGEIRP
APRGQERLKEAAKLGFTRALIPEANRPKQAIPGMEVIAVKRVEEAVARIREIE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=311769 HYN24_RS06940 WP_117608569.1 1467261..1468622(+) (radA) [Dechloromonas sp. HYN0024]
ATGGCCAAAATAAAAACCATCTACAGTTGCACCGAATGCGGCGCCACCAGCCCTAAATGGCAGGGCCAGTGCCCCGGCTG
TAACGACTGGAACACACTGGTCGAAACGGTGGCCGACAAGGCACCGACCAACAGCCGCTTCGAATCCCTGGCGCCGACCG
CCAAATTGCAGAATCTTTCGGAAATCGAGGCGCGTGAAGTCGAGCGCATCGCCTCCGGCATCGGTGAATTCGACCGGGCG
CTCGGCGGCGGGCTGGTCAATGGTGCGGTCGTGCTGATCGGTGGTGATCCGGGCATCGGCAAGAGCACCTTGTTGTTGCA
GGCACTGGCCCACCTCTCGGTCGCCAACAAGGTGCTTTACGTCAGCGGCGAAGAATCCGGTGAGCAGGTGGCCCTGCGCG
CCCGGCGACTTGGCCTTGATACCCGGCGTCTGCAACTGATGGCCGAAATCAATCTGGAGCGCATCCTCGCCACCCTGCAG
GCCGAAAGACCGACGGTAGCGGTCATCGATTCGATCCAGACGCTATGGTCCGACCAGCTTTCCAGCGCTCCGGGTTCGGT
GGCGCAGGTGCGTGAATGCGCGGCGCAACTGACCCGTCTGGCCAAGCAGGCCGGTATCACGGTGATTCTTGTCGGCCATG
TCACGAAAGAGGGGGCTTTGGCTGGCCCCCGCGTTCTCGAGCACATCGTCGACACCGTGCTGTATTTCGAGGGTGACACG
CATTCGAGTTTCCGTCTGGTACGGGCCGTCAAGAACCGTTTTGGGGCGGTCAATGAACTCGGTGTCTTTGCCATGACCGA
CAAGGGCCTGAAAGGCGTCAACAATCCGTCGGCGCTTTTCCTGTCGCAGCACGGGCAGGATGTGGCCGGCTCCTGTGTGA
TGGTGACGCAGGAAGGAACGCGGCCGCTTCTCGTTGAAATACAGGCGCTGGTCGATACCTCGCATGGCAATCCGCGACGT
CTGACGGTCGGCCTCGATCCGCAACGACTGGCCATGCTGCTGGCTGTCCTGCATCGCCATGCCGGTATTGTGTGCTTTGA
TCAGGATGTCTTCGTCAATGCCGTCGGCGGGGTCAAGATTACCGAACCGGCAGCCGATCTCGCGGTGTTACTTTCAATAA
CATCTTCCCTTAAAAATAAACCATTACCGTCGAAACTTATAGTGTTTGGTGAGATTGGTCTGGCCGGGGAAATCCGCCCG
GCACCACGCGGCCAGGAGCGATTGAAGGAGGCGGCCAAGCTGGGTTTTACCCGGGCGCTGATTCCCGAAGCGAATCGCCC
CAAGCAGGCCATTCCCGGCATGGAGGTGATTGCCGTCAAGCGCGTCGAGGAGGCGGTGGCGCGGATTCGCGAGATCGAAT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7A6R5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.549

99.779

0.514
  radA Streptococcus mitis SK321

48.673

99.779

0.486
  radA Streptococcus pneumoniae D39

48.115

99.558

0.479
  radA Streptococcus pneumoniae TIGR4

48.115

99.558

0.479
  radA Streptococcus pneumoniae R6

48.115

99.558

0.479
  radA Streptococcus pneumoniae Rx1

48.115

99.558

0.479
  radA Streptococcus mitis NCTC 12261

47.894

99.558

0.477

Multiple sequence alignment