Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D0Z64_RS06400 Genome accession   NZ_CP031835
Coordinates   1239032..1240828 (+) Length   598 a.a.
NCBI ID   WP_127345771.1    Uniprot ID   -
Organism   Lactobacillus amylolyticus strain L5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1234032..1245828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0Z64_RS06380 - 1234568..1236106 (-) 1539 WP_127345769.1 ABC-F family ATP-binding cassette domain-containing protein -
  D0Z64_RS06385 - 1236107..1236475 (-) 369 WP_080881771.1 hypothetical protein -
  D0Z64_RS08365 - 1236588..1236758 (-) 171 WP_006352816.1 hypothetical protein -
  D0Z64_RS06390 - 1236921..1237610 (-) 690 WP_080881772.1 DUF554 domain-containing protein -
  D0Z64_RS06395 - 1237704..1238867 (-) 1164 Protein_1222 LCP family protein -
  D0Z64_RS06400 pepF 1239032..1240828 (+) 1797 WP_127345771.1 oligoendopeptidase F Regulator
  D0Z64_RS06405 - 1240992..1241558 (+) 567 WP_127345772.1 hypothetical protein -
  D0Z64_RS06410 - 1241598..1242395 (-) 798 WP_080881777.1 metal ABC transporter permease -
  D0Z64_RS06415 - 1242395..1243042 (-) 648 WP_080881778.1 metal ABC transporter ATP-binding protein -
  D0Z64_RS06420 - 1243286..1245268 (-) 1983 WP_127345773.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68161.60 Da        Isoelectric Point: 4.6117

>NTDB_id=311670 D0Z64_RS06400 WP_127345771.1 1239032..1240828(+) (pepF) [Lactobacillus amylolyticus strain L5]
MAIPTRSEIPEELTWDLTRVFKSDADWEKEYQAVKDETAKLSQYKGTFTSGKNLYQALTQIFAVKRRLENVYVYATMSSD
VDTANSHYLSYSAQAQSLASQFEAVTSFINPEILSIPEADLAKYKQEEPRLHDYDHWLDQVTSKRPHTLPAEQERLVADA
GDALSTSENTFNVLTNSDMEYGYVQDENGEMVQLSDGLYSILIQSQDRNVRKNAFDVLYASYGQFENSLASTLSGVVKAH
NYNARVHKYHSAREAALAENNVPTSVYDTLIKEVDSHLDLLHRYVALRKKILGLDDLQMWDMYVPLTGKPALSYNFEQAK
EEAKKALAPLGSDYLSHVDYIFNNRVIDVVENKNKVTGAYSGGAYDTDPYELLNWEDNVDSLYTLVHETGHSVHSWYTRH
NQPYVYGDYPIFVAEIASTTNENILTEYFLDHITDPKTRAFILNYYLDSFKGTLFRQTQFAEFEQFIHEADAKGEPLTAD
TLDDVYAQLNQRYYGDSVEPGGDIAKEWSRIPHFYYNFYVYQYATGFAAATALANKVVQGTQQNRDAYIGYLKSGSSAYP
IDIMKGAGVDMTKPDYLEDAFKTFARRLDEFESLIGQF

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=311670 D0Z64_RS06400 WP_127345771.1 1239032..1240828(+) (pepF) [Lactobacillus amylolyticus strain L5]
ATGGCAATTCCAACAAGAAGCGAAATCCCTGAAGAATTAACCTGGGATTTGACCCGTGTATTCAAAAGCGACGCGGATTG
GGAAAAAGAATATCAAGCTGTTAAAGATGAAACAGCGAAGTTAAGCCAGTATAAAGGTACTTTTACCTCTGGCAAAAATT
TGTATCAGGCCTTAACCCAAATTTTTGCAGTTAAGCGCCGGCTGGAAAACGTTTATGTCTACGCTACGATGTCCAGCGAT
GTTGATACTGCCAACAGCCACTACTTAAGCTATTCTGCTCAGGCTCAAAGTTTAGCCAGTCAGTTCGAAGCCGTTACTTC
ATTTATCAATCCTGAAATTTTGAGCATCCCCGAAGCTGATTTAGCCAAATACAAGCAAGAAGAGCCTCGGCTGCATGATT
ACGATCATTGGCTTGATCAAGTAACCAGCAAAAGACCGCATACTTTGCCAGCTGAACAAGAACGACTGGTGGCAGATGCT
GGCGATGCCCTGAGTACTTCCGAAAATACTTTTAACGTTTTAACCAATTCAGACATGGAATATGGCTACGTCCAGGACGA
AAATGGCGAAATGGTGCAATTATCCGACGGCTTGTACTCAATTTTGATTCAATCACAAGACCGCAATGTCCGTAAAAATG
CCTTTGACGTTTTATACGCCAGCTATGGTCAATTTGAAAACTCCCTGGCTTCCACCCTGTCAGGCGTGGTCAAGGCGCAC
AACTACAACGCACGCGTCCACAAGTATCACTCTGCTCGTGAAGCTGCATTAGCTGAAAACAACGTGCCAACCTCTGTTTA
TGATACTTTGATCAAAGAAGTCGACAGCCATCTTGACCTTTTGCACCGCTATGTTGCTTTGCGTAAAAAGATTCTGGGTC
TTGATGACCTGCAAATGTGGGACATGTATGTGCCTCTTACAGGCAAGCCTGCGCTTAGCTATAATTTTGAACAAGCAAAA
GAAGAAGCCAAGAAGGCTTTGGCACCATTGGGCAGCGATTACTTAAGCCACGTTGATTATATTTTTAACAACCGTGTCAT
TGACGTTGTAGAAAATAAAAACAAGGTTACTGGGGCCTACTCCGGTGGAGCTTACGACACTGATCCATATGAATTATTGA
ACTGGGAAGACAACGTTGATTCGCTCTATACTTTGGTTCATGAAACAGGCCACTCGGTTCACTCATGGTATACCCGCCAC
AATCAGCCTTACGTTTATGGCGATTACCCAATTTTTGTCGCTGAAATTGCTTCAACCACTAATGAAAATATTTTAACAGA
ATATTTCTTGGACCACATCACTGATCCTAAGACCCGTGCTTTCATCCTCAACTACTACCTTGACTCCTTCAAGGGAACAT
TATTCAGACAGACTCAATTCGCAGAATTTGAACAATTTATTCATGAAGCTGACGCTAAGGGCGAACCACTTACTGCTGAT
ACTTTAGACGATGTTTATGCTCAGTTAAACCAGCGCTACTACGGCGACAGCGTTGAACCTGGCGGCGATATTGCCAAAGA
ATGGTCACGCATTCCGCATTTCTATTACAACTTCTATGTTTACCAATATGCAACCGGCTTTGCAGCAGCAACTGCTCTTG
CCAATAAAGTAGTGCAGGGAACCCAGCAGAACCGCGATGCCTACATCGGTTATCTCAAGTCTGGTTCCAGCGCATATCCA
ATCGATATTATGAAGGGTGCCGGCGTTGATATGACTAAGCCAGACTATTTGGAAGATGCCTTTAAGACCTTTGCTCGTCG
CCTTGATGAATTCGAAAGTTTAATTGGGCAATTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-180)

Peptidase family M3 (Peptidase_M3)

(202-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.196

98.997

0.517

Multiple sequence alignment