Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D0Z64_RS01545 Genome accession   NZ_CP031835
Coordinates   295981..297357 (+) Length   458 a.a.
NCBI ID   WP_080881157.1    Uniprot ID   -
Organism   Lactobacillus amylolyticus strain L5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 290981..302357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0Z64_RS01515 - 291593..291784 (+) 192 WP_006351894.1 hypothetical protein -
  D0Z64_RS01520 - 291794..292471 (+) 678 WP_127345543.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  D0Z64_RS01525 - 292576..293511 (+) 936 WP_080881156.1 AAA family ATPase -
  D0Z64_RS01530 pepC 293563..294912 (-) 1350 WP_006351891.1 aminopeptidase C -
  D0Z64_RS08465 - 294993..295181 (-) 189 WP_228116998.1 hypothetical protein -
  D0Z64_RS01540 - 295430..295981 (+) 552 WP_006351889.1 dUTP diphosphatase -
  D0Z64_RS01545 radA 295981..297357 (+) 1377 WP_080881157.1 DNA repair protein RadA Machinery gene
  D0Z64_RS01550 gltX 297433..298932 (+) 1500 WP_006351887.1 glutamate--tRNA ligase -
  D0Z64_RS01555 cysS 299037..300461 (+) 1425 WP_236943523.1 cysteine--tRNA ligase -
  D0Z64_RS01560 - 300454..300897 (+) 444 WP_006351885.1 Mini-ribonuclease 3 -
  D0Z64_RS01565 rlmB 300884..301639 (+) 756 WP_080881159.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50209.79 Da        Isoelectric Point: 7.1403

>NTDB_id=311662 D0Z64_RS01545 WP_080881157.1 295981..297357(+) (radA) [Lactobacillus amylolyticus strain L5]
MARVKTQYKCRSCGYISASYLGRCPNCGAWNQFEKETQEVQKHSAKAAPSQLIKKTGINEPVNLEKVKAEKENRIPTESE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLILQIMSDLSKKYKVLYVSGEESANQIKLRADRLGVGQSQMLLYPETDMHDI
RETIDDIKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDVITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDEHHSYRILHSVKNRFGAANEIGMFEMENGGLREVTNPSSIFLDQRLPQSTGSAVVVSLEGTRPLLAEIQALVTPTA
FGYAKRTTSGIDYNRAALLLAVLEKRGNLMLQNQDVYLTATGGIRLSEPAIDLAAIMAVASSYTDKEIQPTDCFVGEVGL
TGEVRRVNKIEARVKEAAKVGFKRIFIPRHNLSKSLMNNGIEVIPVSSIPQALKLVFN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=311662 D0Z64_RS01545 WP_080881157.1 295981..297357(+) (radA) [Lactobacillus amylolyticus strain L5]
ATGGCAAGGGTAAAAACACAATATAAATGTCGTTCATGCGGCTATATTTCAGCATCTTATTTGGGTCGCTGTCCTAACTG
CGGAGCATGGAATCAATTTGAAAAAGAAACGCAAGAAGTTCAAAAGCATTCAGCTAAAGCAGCGCCTAGTCAATTAATTA
AAAAGACAGGGATTAATGAACCGGTCAATTTGGAAAAAGTAAAGGCTGAAAAGGAAAACCGAATTCCAACTGAATCAGAA
GAATTAAACCGCGTTTTGGGCGGAGGAATTGTGCCAGGATCATTAGTCTTAATCGGCGGCGATCCAGGAATCGGCAAGTC
TACTCTGATACTGCAAATTATGAGCGATTTATCCAAAAAATATAAAGTTCTCTATGTTTCAGGTGAAGAGTCGGCAAATC
AAATTAAATTGCGGGCAGACCGCCTAGGCGTTGGTCAAAGTCAAATGCTGCTTTATCCAGAAACCGACATGCATGATATC
AGAGAAACCATTGATGATATTAAACCAGATTTTGTGGTTATTGATTCAATTCAAACGATGAATGAACCAAGTTTAGATTC
AATGACTGGTTCAGCTTCACAGGTCCGTGAGGTTACCAGTGAACTAATGAAGATCGCTAAAATGGATGTCATTACGGTTT
TTGTTATTGGGCATGTTACCAAGGAAGGTGCAATCGCTGGGCCGAAAATCTTGGAACATATGGTAGATACAGTCCTTTAC
TTTGAAGGGGATGAACACCATTCATACCGGATTTTGCATTCTGTTAAAAACCGTTTTGGCGCTGCGAATGAAATTGGGAT
GTTTGAAATGGAAAACGGTGGCTTAAGAGAAGTTACCAATCCATCTTCAATTTTTCTTGATCAGCGTTTGCCGCAATCAA
CCGGATCGGCGGTAGTAGTTTCGCTTGAAGGAACAAGGCCGCTGCTCGCAGAAATTCAGGCTTTGGTTACTCCGACCGCT
TTTGGTTATGCTAAAAGAACGACGTCGGGAATTGACTATAATCGTGCAGCTCTTCTTCTGGCTGTTCTTGAAAAACGAGG
TAACTTAATGCTGCAGAATCAAGATGTTTACTTAACTGCTACCGGTGGTATTCGTCTTAGTGAGCCTGCGATTGATTTGG
CTGCAATCATGGCCGTTGCTTCCAGCTATACTGACAAGGAGATTCAACCGACTGATTGCTTTGTGGGTGAAGTTGGCTTG
ACTGGTGAAGTAAGAAGAGTCAATAAAATTGAAGCACGAGTAAAAGAGGCCGCAAAAGTTGGGTTTAAGCGAATTTTTAT
TCCACGACATAATCTCAGCAAAAGCTTAATGAATAATGGAATTGAAGTTATTCCTGTTTCTAGCATCCCTCAAGCATTAA
AGTTAGTTTTTAATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

58.643

99.782

0.585
  radA Streptococcus pneumoniae D39

58.643

99.782

0.585
  radA Streptococcus pneumoniae R6

58.643

99.782

0.585
  radA Streptococcus pneumoniae TIGR4

58.643

99.782

0.585
  radA Streptococcus mitis NCTC 12261

58.643

99.782

0.585
  radA Streptococcus mitis SK321

58.643

99.782

0.585
  radA Bacillus subtilis subsp. subtilis str. 168

55.604

99.345

0.552

Multiple sequence alignment