Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D0R13_RS15220 Genome accession   NZ_CP031833
Coordinates   2956986..2957615 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2452     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2951986..2962615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0R13_RS15205 helD 2952228..2954282 (-) 2055 WP_094319270.1 DNA helicase IV -
  D0R13_RS15210 yccF 2954405..2954851 (+) 447 WP_001261235.1 YccF domain-containing protein -
  D0R13_RS15215 yccS 2954861..2957023 (+) 2163 WP_000875061.1 YccS family putative transporter -
  D0R13_RS15220 sxy/tfoX 2956986..2957615 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  D0R13_RS15225 sulA 2957752..2958261 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  D0R13_RS15235 ompA 2958618..2959658 (+) 1041 WP_000750416.1 porin OmpA -
  D0R13_RS15240 matP 2959734..2960186 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  D0R13_RS15245 ycbZ 2960372..2962132 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=311648 D0R13_RS15220 WP_000839153.1 2956986..2957615(-) (sxy/tfoX) [Escherichia coli strain 2452]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=311648 D0R13_RS15220 WP_000839153.1 2956986..2957615(-) (sxy/tfoX) [Escherichia coli strain 2452]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment