Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D0898_RS16185 Genome accession   NZ_CP031817
Coordinates   3223289..3223885 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain INF235 isolate INF235     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3218289..3228885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0898_RS16170 (D0898_16190) helD 3218497..3220551 (-) 2055 WP_009308304.1 DNA helicase IV -
  D0898_RS16175 (D0898_16195) - 3220676..3221122 (+) 447 WP_119735200.1 YccF domain-containing protein -
  D0898_RS16180 (D0898_16200) yccS 3221140..3223275 (+) 2136 WP_009308302.1 YccS family putative transporter -
  D0898_RS16185 (D0898_16205) sxy/tfoX 3223289..3223885 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  D0898_RS16195 (D0898_16215) sulA 3224234..3224743 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  D0898_RS16200 (D0898_16220) ompA 3225096..3226166 (+) 1071 WP_002898408.1 porin OmpA -
  D0898_RS16205 (D0898_16225) matP 3226298..3226750 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  D0898_RS16210 (D0898_16230) - 3226936..3228693 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=311625 D0898_RS16185 WP_004179217.1 3223289..3223885(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF235 isolate INF235]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=311625 D0898_RS16185 WP_004179217.1 3223289..3223885(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF235 isolate INF235]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGTTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment