Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D0896_RS17525 Genome accession   NZ_CP031808
Coordinates   3436095..3436661 (-) Length   188 a.a.
NCBI ID   WP_117362224.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain INF206 isolate INF206     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3431095..3441661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0896_RS17510 (D0896_17510) helD 3431273..3433327 (-) 2055 WP_065900034.1 DNA helicase IV -
  D0896_RS17515 (D0896_17515) - 3433452..3433898 (+) 447 WP_002898425.1 YccF domain-containing protein -
  D0896_RS17520 (D0896_17520) yccS 3433916..3436051 (+) 2136 WP_117362223.1 YccS family putative transporter -
  D0896_RS17525 (D0896_17525) sxy/tfoX 3436095..3436661 (-) 567 WP_117362224.1 TfoX/Sxy family DNA transformation protein Regulator
  D0896_RS17535 (D0896_17535) sulA 3437010..3437519 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  D0896_RS17540 (D0896_17540) ompA 3437872..3438942 (+) 1071 WP_002898408.1 porin OmpA -
  D0896_RS17545 (D0896_17545) matP 3439074..3439526 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  D0896_RS17550 (D0896_17550) - 3439712..3441469 (+) 1758 WP_117362225.1 Lon protease family protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 21317.77 Da        Isoelectric Point: 10.2372

>NTDB_id=311579 D0896_RS17525 WP_117362224.1 3436095..3436661(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF206 isolate INF206]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRR

Nucleotide


Download         Length: 567 bp        

>NTDB_id=311579 D0896_RS17525 WP_117362224.1 3436095..3436661(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF206 isolate INF206]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-188)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.532

100

0.505

Multiple sequence alignment