Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E4U78_RS21055 Genome accession   NZ_CP038305
Coordinates   4154286..4154891 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O157:H7 strain SS NE 1040-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4149286..4159891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4U78_RS21035 (E4U78_21715) aes 4149427..4150386 (+) 960 WP_000801803.1 acetyl esterase -
  E4U78_RS21040 (E4U78_21720) hemH 4150383..4151345 (-) 963 WP_001250105.1 ferrochelatase -
  E4U78_RS21045 (E4U78_21725) adk 4151477..4152121 (-) 645 WP_001220233.1 adenylate kinase -
  E4U78_RS21050 (E4U78_21730) htpG 4152302..4154176 (-) 1875 WP_001508888.1 molecular chaperone HtpG -
  E4U78_RS21055 (E4U78_21735) recR 4154286..4154891 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  E4U78_RS21060 (E4U78_21740) ybaB 4154891..4155220 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  E4U78_RS21065 (E4U78_21745) dnaX 4155273..4157204 (-) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  E4U78_RS21070 (E4U78_21750) apt 4157333..4157884 (-) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  E4U78_RS21075 (E4U78_21755) ybaN 4158037..4158414 (-) 378 WP_001188905.1 DUF454 family protein -
  E4U78_RS21080 (E4U78_21760) priC 4158484..4159011 (+) 528 WP_000844886.1 primosomal replication protein N'' -
  E4U78_RS21085 (E4U78_21765) rsmS 4159025..4159189 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=311515 E4U78_RS21055 WP_001195025.1 4154286..4154891(-) (recR) [Escherichia coli O157:H7 strain SS NE 1040-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=311515 E4U78_RS21055 WP_001195025.1 4154286..4154891(-) (recR) [Escherichia coli O157:H7 strain SS NE 1040-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443