Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D0883_RS16945 Genome accession   NZ_CP031792
Coordinates   3385591..3386187 (-) Length   198 a.a.
NCBI ID   WP_117380863.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain INF116 isolate INF116     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3380591..3391187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0883_RS16930 (D0883_16930) helD 3380799..3382853 (-) 2055 WP_004176653.1 DNA helicase IV -
  D0883_RS16935 (D0883_16935) - 3382978..3383424 (+) 447 WP_002898425.1 YccF domain-containing protein -
  D0883_RS16940 (D0883_16940) yccS 3383442..3385577 (+) 2136 WP_117380862.1 YccS family putative transporter -
  D0883_RS16945 (D0883_16945) sxy/tfoX 3385591..3386187 (-) 597 WP_117380863.1 TfoX/Sxy family DNA transformation protein Regulator
  D0883_RS16955 (D0883_16955) sulA 3386536..3387045 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  D0883_RS16960 (D0883_16960) ompA 3387398..3388468 (+) 1071 WP_002898408.1 porin OmpA -
  D0883_RS16965 (D0883_16965) matP 3388600..3389052 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  D0883_RS16970 (D0883_16970) - 3389238..3390995 (+) 1758 WP_020804925.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22502.04 Da        Isoelectric Point: 9.8318

>NTDB_id=311507 D0883_RS16945 WP_117380863.1 3385591..3386187(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF116 isolate INF116]
MRNLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=311507 D0883_RS16945 WP_117380863.1 3385591..3386187(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF116 isolate INF116]
ATGAGAAACCTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.795

98.485

0.51

Multiple sequence alignment