Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D0876_RS16560 Genome accession   NZ_CP031789
Coordinates   3272935..3273531 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KSB1_1I isolate KSB1_1I     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3267935..3278531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0876_RS16545 (D0876_16545) helD 3268143..3270197 (-) 2055 WP_004179218.1 DNA helicase IV -
  D0876_RS16550 (D0876_16550) - 3270322..3270768 (+) 447 WP_002898425.1 YccF domain-containing protein -
  D0876_RS16555 (D0876_16555) yccS 3270786..3272921 (+) 2136 WP_023316617.1 YccS family putative transporter -
  D0876_RS16560 (D0876_16560) sxy/tfoX 3272935..3273531 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  D0876_RS16570 (D0876_16570) sulA 3273880..3274389 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  D0876_RS16575 (D0876_16575) ompA 3274742..3275812 (+) 1071 WP_002898408.1 porin OmpA -
  D0876_RS16580 (D0876_16580) matP 3275944..3276396 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  D0876_RS16585 (D0876_16585) - 3276582..3278339 (+) 1758 WP_065803627.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=311483 D0876_RS16560 WP_004179217.1 3272935..3273531(-) (sxy/tfoX) [Klebsiella pneumoniae strain KSB1_1I isolate KSB1_1I]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=311483 D0876_RS16560 WP_004179217.1 3272935..3273531(-) (sxy/tfoX) [Klebsiella pneumoniae strain KSB1_1I isolate KSB1_1I]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment