Detailed information NTG0311460

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: D0Z01_RS05510
• Genome accession: NZ_CP031787
• Coordinates: 1093549..1094988 (+)
• Length: 479 a.a.
• NCBI ID: WP_023853393.1
• Uniprot ID: -
• Organism: Bordetella pertussis strain Tohama
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1088549..1099988

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0Z01_RS05495	-	1089432..1090685 (+)	1254	WP_010929638.1	amidase	-
D0Z01_RS05500	leuA	1090776..1092476 (-)	1701	WP_010929639.1	2-isopropylmalate synthase	-
D0Z01_RS05505	-	1092903..1093550 (-)	648	WP_010929640.1	hypothetical protein	-
D0Z01_RS05510	rpoN/rpoN1	1093549..1094988 (+)	1440	WP_023853393.1	RNA polymerase factor sigma-54	Machinery gene
D0Z01_RS05515	-	1095081..1095383 (+)	303	WP_003815905.1	(2Fe-2S)-binding protein	-
D0Z01_RS05520	-	1095411..1096289 (-)	879	WP_010929512.1	LysR substrate-binding domain-containing protein	-
D0Z01_RS05525	-	1096397..1097325 (+)	929	Protein_1072	DMT family transporter	-
D0Z01_RS05530	-	1097556..1098506 (-)	951	WP_005012067.1	IS481-like element IS481 family transposase	-
D0Z01_RS05535	-	1098602..1098877 (+)	276	Protein_1074	porin	-

Sequence

Protein

• Length: 479 a.a.
• Molecular weight: 52353.58 Da
• Isoelectric Point: 4.8131

>NTDB_id=311460 D0Z01_RS05510 WP_023853393.1 1093549..1094988(+) (rpoN/rpoN1) [Bordetella pertussis strain Tohama]
MQNIVPMTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAELSQALAENPLLERDEDPAREEQADPEREASVEADEAP
DTELRLDEMPGSGGVLPDDDSDLPQAARPDTLREHLLGQLALTRAAPRDAALCGLLIDELDENGYLDSPLEEILTWLPAE
VQADLDELRAALALLQSFDPAGIGARDMAECLQLQLRQPDPARLPEAADAEVLACARRICAQHLPLLATGNVARVREAVQ
CDEAVVRAAHALIPRLEPRPGRAWTVPAADYAIPDVIVRRTRQGWQAVLNSAVVPRLHVNAVYAQVLGGQRQGGNAGLQA
QLQQARWMIRNVEQRFDTILRVAQAIVAHQQAFFTQGPAAMRPLILKDIAGELDLHESTISRATTQKYMLTPFGTLELKR
FFGAGVSTDGGDATSATAVQAVIRQMVADEDRAKPLSDSQIMQRLADQGIVIARRTVAKYREALRIAPATLRKAHAAGR

Nucleotide

• Length: 1440 bp

>NTDB_id=311460 D0Z01_RS05510 WP_023853393.1 1093549..1094988(+) (rpoN/rpoN1) [Bordetella pertussis strain Tohama]
ATGCAAAATATTGTACCTATGACTCGTCCCGCGCTAGAACTTCGTCCTGGTCAACATTTGACGTTGACCCCTCAACTGCA
ACAGTCGATCCGGCTGTTGCAGCTGTCGTCGCTGGAGCTGGAGGCCGAACTGTCGCAGGCGCTGGCCGAGAATCCGTTGC
TGGAACGCGACGAAGATCCGGCGCGCGAGGAGCAGGCCGACCCCGAGCGCGAGGCCTCGGTCGAGGCCGACGAGGCGCCG
GATACCGAACTGCGCCTGGACGAGATGCCCGGTTCGGGCGGCGTTCTTCCCGACGACGACAGCGACCTGCCGCAGGCGGC
GCGCCCGGATACCCTGCGCGAACACCTGCTGGGGCAGCTGGCGCTGACGCGCGCCGCGCCGCGCGATGCGGCGCTGTGCG
GTCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGATTCGCCCCTGGAAGAGATCCTGACCTGGCTGCCGGCCGAG
GTGCAGGCCGACCTGGACGAGCTGCGCGCGGCGCTGGCATTGCTGCAGTCGTTCGATCCGGCAGGCATCGGCGCGCGCGA
CATGGCCGAATGCCTGCAGCTGCAGTTGCGCCAGCCCGATCCGGCGCGCCTGCCCGAGGCGGCCGATGCCGAGGTGCTGG
CCTGTGCGCGGCGCATCTGCGCGCAGCATCTGCCCTTGCTGGCCACCGGCAACGTGGCCCGCGTGCGCGAGGCCGTGCAA
TGCGACGAGGCGGTCGTGCGCGCCGCGCATGCGCTGATCCCGCGCCTGGAACCGCGGCCGGGCCGCGCCTGGACGGTGCC
GGCGGCCGATTACGCCATTCCCGACGTGATCGTGCGCCGTACCCGCCAGGGCTGGCAGGCGGTGCTCAACAGCGCCGTCG
TGCCGCGGCTGCATGTCAATGCCGTCTATGCGCAAGTGCTGGGCGGCCAGCGCCAGGGCGGCAACGCCGGCCTGCAGGCG
CAGCTGCAACAGGCGCGCTGGATGATACGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCGCAGGCGATCGT
GGCGCATCAGCAGGCGTTCTTCACCCAGGGGCCGGCGGCCATGCGGCCGCTGATCCTCAAGGACATCGCCGGCGAACTGG
ATCTGCACGAATCGACCATTTCGCGCGCGACGACGCAGAAGTACATGCTCACACCGTTCGGTACGCTGGAGCTCAAGCGC
TTCTTTGGCGCGGGCGTGTCCACCGATGGCGGAGACGCCACCTCGGCCACCGCGGTGCAGGCGGTGATCCGCCAGATGGT
GGCCGACGAGGATCGCGCCAAGCCCTTGTCGGACAGCCAGATCATGCAGCGCCTGGCCGACCAGGGCATCGTCATTGCCC
GCCGCACGGTGGCCAAGTACCGCGAGGCGCTGCGGATTGCGCCAGCGACGCTGCGCAAGGCCCACGCCGCGGGTCGTTAG

Domains

Predicted by InterProScan.

• Sigma-54 factor, core binding domain (Sigma54_CBD) (106-303)

• Sigma-54, DNA binding domain (Sigma54_DBD) (318-473)

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (12-55)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	48.419	100	0.511