Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LCABL_RS05110 | Genome accession | NC_010999 |
| Coordinates | 996720..997781 (+) | Length | 353 a.a. |
| NCBI ID | WP_003598111.1 | Uniprot ID | A0A243PT23 |
| Organism | Lacticaseibacillus paracasei | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 968454..1007744 | 996720..997781 | within | 0 |
Gene organization within MGE regions
Location: 968454..1007744
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCABL_RS04970 (LCABL_10080) | - | 968454..969452 (-) | 999 | WP_012490951.1 | IS30 family transposase | - |
| LCABL_RS04975 (LCABL_10090) | - | 969690..971018 (-) | 1329 | WP_012491272.1 | metallophosphoesterase | - |
| LCABL_RS04980 (LCABL_10100) | - | 971209..971475 (+) | 267 | WP_003564140.1 | ACT domain-containing protein | - |
| LCABL_RS04985 (LCABL_10110) | - | 971524..972867 (+) | 1344 | WP_003657900.1 | PFL family protein | - |
| LCABL_RS04990 (LCABL_10120) | - | 972977..974032 (+) | 1056 | WP_003569473.1 | competence protein CoiA | - |
| LCABL_RS04995 (LCABL_10130) | - | 974222..974857 (-) | 636 | WP_003601677.1 | DsbA family protein | - |
| LCABL_RS05000 (LCABL_10140) | - | 974927..975520 (-) | 594 | WP_003601679.1 | CYTH domain-containing protein | - |
| LCABL_RS05005 (LCABL_10150) | - | 975714..976385 (+) | 672 | WP_003564145.1 | GTP pyrophosphokinase family protein | - |
| LCABL_RS05010 (LCABL_10160) | - | 976387..977184 (+) | 798 | WP_003564146.1 | NAD kinase | - |
| LCABL_RS05015 (LCABL_10170) | - | 977184..978086 (+) | 903 | WP_012491275.1 | RluA family pseudouridine synthase | - |
| LCABL_RS05020 (LCABL_10180) | - | 978195..979253 (-) | 1059 | WP_012491276.1 | FAD:protein FMN transferase | - |
| LCABL_RS05025 (LCABL_10190) | - | 979410..980045 (-) | 636 | WP_003569480.1 | copper homeostasis protein CutC | - |
| LCABL_RS05030 (LCABL_10200) | - | 980067..980885 (-) | 819 | WP_012491277.1 | undecaprenyl-diphosphate phosphatase | - |
| LCABL_RS05035 (LCABL_10210) | - | 981088..982128 (-) | 1041 | WP_012491278.1 | lactonase family protein | - |
| LCABL_RS05040 (LCABL_10220) | - | 982400..982777 (+) | 378 | WP_003564152.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| LCABL_RS05045 (LCABL_10230) | rpsN | 982889..983158 (-) | 270 | WP_003564153.1 | 30S ribosomal protein S14 | - |
| LCABL_RS05050 (LCABL_10240) | - | 983286..984263 (-) | 978 | WP_024109435.1 | GMP reductase | - |
| LCABL_RS05055 (LCABL_10250) | - | 984503..985450 (-) | 948 | WP_003564155.1 | magnesium transporter CorA family protein | - |
| LCABL_RS05060 (LCABL_10260) | - | 985516..986358 (+) | 843 | WP_012491280.1 | methyltransferase domain-containing protein | - |
| LCABL_RS05065 (LCABL_10270) | trmL | 986613..987122 (+) | 510 | WP_003564157.1 | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | - |
| LCABL_RS05070 (LCABL_10280) | - | 987249..987659 (+) | 411 | WP_003564159.1 | DUF1149 family protein | - |
| LCABL_RS05075 (LCABL_10290) | - | 987832..990153 (+) | 2322 | WP_003604697.1 | FtsK/SpoIIIE family DNA translocase | - |
| LCABL_RS05080 (LCABL_10300) | yfmF | 990162..991424 (+) | 1263 | WP_012491281.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| LCABL_RS05085 (LCABL_10310) | yfmH | 991421..992713 (+) | 1293 | WP_003661348.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| LCABL_RS05090 (LCABL_10320) | ymfI | 992713..993441 (+) | 729 | WP_003569514.1 | elongation factor P 5-aminopentanone reductase | - |
| LCABL_RS05095 (LCABL_10330) | - | 993528..994457 (+) | 930 | WP_003593861.1 | helix-turn-helix domain-containing protein | - |
| LCABL_RS05100 (LCABL_10340) | pgsA | 994454..995047 (+) | 594 | WP_003564171.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| LCABL_RS05105 (LCABL_10350) | cinA | 995422..996663 (+) | 1242 | WP_012491282.1 | competence/damage-inducible protein A | Machinery gene |
| LCABL_RS05110 (LCABL_10360) | recA | 996720..997781 (+) | 1062 | WP_003598111.1 | recombinase RecA | Machinery gene |
| LCABL_RS05115 (LCABL_10370) | rny | 998083..999654 (+) | 1572 | WP_003657913.1 | ribonuclease Y | - |
| LCABL_RS05120 (LCABL_10380) | - | 999748..1000398 (-) | 651 | WP_012491283.1 | YigZ family protein | - |
| LCABL_RS05125 (LCABL_10390) | - | 1000426..1001688 (+) | 1263 | WP_016379935.1 | helicase-related protein | - |
| LCABL_RS05130 (LCABL_10400) | - | 1001901..1002362 (+) | 462 | WP_003583965.1 | ComF family protein | - |
| LCABL_RS05135 (LCABL_10410) | hpf | 1002486..1003043 (+) | 558 | WP_003569531.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| LCABL_RS05140 (LCABL_10420) | secA | 1003377..1005740 (+) | 2364 | WP_003578257.1 | preprotein translocase subunit SecA | - |
| LCABL_RS05145 (LCABL_10440) | prfB | 1005865..1006981 (+) | 1117 | WP_096772597.1 | peptide chain release factor 2 | - |
| LCABL_RS05150 (LCABL_10450) | ftsE | 1007058..1007744 (+) | 687 | WP_012491286.1 | cell division ATP-binding protein FtsE | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37745.94 Da Isoelectric Point: 5.8234
>NTDB_id=31144 LCABL_RS05110 WP_003598111.1 996720..997781(+) (recA) [Lacticaseibacillus paracasei]
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV
Nucleotide
Download Length: 1062 bp
>NTDB_id=31144 LCABL_RS05110 WP_003598111.1 996720..997781(+) (recA) [Lacticaseibacillus paracasei]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGCG
CATTGAAGTTTTATGCGACTGTTCGGTTAGAAATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGCG
CATTGAAGTTTTATGCGACTGTTCGGTTAGAAATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA
Similar proteins
Only experimentally validated proteins are listed.