Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E4U66_RS19245 Genome accession   NZ_CP038302
Coordinates   3726120..3726596 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli O157:H7 strain SS TX 313-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3721120..3731596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4U66_RS19195 (E4U66_19815) infA 3721234..3721452 (+) 219 WP_001040187.1 translation initiation factor IF-1 -
  E4U66_RS19205 (E4U66_19825) - 3721943..3722224 (-) 282 Protein_3806 DUF4942 domain-containing protein -
  E4U66_RS19210 (E4U66_19830) - 3722506..3723510 (-) 1005 WP_001179707.1 IS110-like element ISSfl8 family transposase -
  E4U66_RS19215 (E4U66_19835) - 3723582..3724142 (-) 561 Protein_3808 DUF4942 domain-containing protein -
  E4U66_RS19220 (E4U66_19840) - 3724227..3724424 (-) 198 WP_000839249.1 DUF957 domain-containing protein -
  E4U66_RS19225 (E4U66_19845) - 3724436..3724924 (-) 489 WP_000761724.1 DUF5983 family protein -
  E4U66_RS19230 (E4U66_19850) - 3724921..3725298 (-) 378 WP_000854714.1 TA system toxin CbtA family protein -
  E4U66_RS19235 (E4U66_19855) cbeA 3725388..3725756 (-) 369 WP_001285574.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  E4U66_RS19240 (E4U66_19860) - 3725836..3726057 (-) 222 WP_000692328.1 DUF987 domain-containing protein -
  E4U66_RS19245 (E4U66_19865) radC 3726120..3726596 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  E4U66_RS19250 (E4U66_19870) - 3726612..3727085 (-) 474 WP_001456342.1 antirestriction protein -
  E4U66_RS19255 (E4U66_19875) - 3727179..3727424 (-) 246 WP_000680582.1 hypothetical protein -
  E4U66_RS19260 (E4U66_19880) - 3727424..3728242 (-) 819 WP_001234742.1 DUF932 domain-containing protein -
  E4U66_RS29820 - 3728332..3728406 (-) 75 Protein_3818 hypothetical protein -
  E4U66_RS29460 - 3728374..3728513 (+) 140 Protein_3819 hypothetical protein -
  E4U66_RS19270 (E4U66_19895) - 3728653..3729066 (-) 414 WP_000789534.1 hypothetical protein -
  E4U66_RS19275 (E4U66_19900) - 3729336..3729875 (-) 540 WP_001104024.1 DUF4339 domain-containing protein -
  E4U66_RS29465 - 3730001..3730174 (-) 174 WP_001445295.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=311430 E4U66_RS19245 WP_001186726.1 3726120..3726596(-) (radC) [Escherichia coli O157:H7 strain SS TX 313-1]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=311430 E4U66_RS19245 WP_001186726.1 3726120..3726596(-) (radC) [Escherichia coli O157:H7 strain SS TX 313-1]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392