Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   D0819_RS18840 Genome accession   NZ_CP031784
Coordinates   3614897..3615346 (-) Length   149 a.a.
NCBI ID   WP_153257237.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3609897..3620346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS18800 - 3610345..3610531 (+) 187 Protein_3665 hypothetical protein -
  D0819_RS18805 (D0819_18885) - 3610568..3610888 (+) 321 Protein_3666 RDD family protein -
  D0819_RS18810 (D0819_18890) yckD 3610972..3611304 (+) 333 WP_046160038.1 YckD family protein -
  D0819_RS18815 (D0819_18895) - 3611432..3611854 (+) 423 WP_170939093.1 MarR family transcriptional regulator -
  D0819_RS18820 (D0819_18900) - 3611842..3612183 (+) 342 WP_032724911.1 DUF3147 family protein -
  D0819_RS18825 (D0819_18905) - 3612202..3612930 (+) 729 WP_021481826.1 AAA family ATPase -
  D0819_RS18830 (D0819_18910) bglC 3613003..3614436 (+) 1434 WP_153257236.1 6-phospho-beta-glucosidase -
  D0819_RS18835 (D0819_18915) nin 3614473..3614870 (-) 398 Protein_3672 DNA-entry nuclease inhibitor -
  D0819_RS18840 (D0819_18920) nucA/comI 3614897..3615346 (-) 450 WP_153257237.1 DNA-entry nuclease Machinery gene
  D0819_RS18845 (D0819_18925) tlpC 3615514..3617235 (-) 1722 WP_153257238.1 methyl-accepting chemotaxis protein TlpC -
  D0819_RS18850 (D0819_18930) hxlB 3617340..3617897 (-) 558 WP_041850679.1 6-phospho-3-hexuloisomerase -
  D0819_RS18855 (D0819_18935) hxlA 3617903..3618535 (-) 633 WP_021481819.1 3-hexulose-6-phosphate synthase -
  D0819_RS18860 (D0819_18940) hxlR 3618766..3619128 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16438.42 Da        Isoelectric Point: 4.6274

>NTDB_id=311418 D0819_RS18840 WP_153257237.1 3614897..3615346(-) (nucA/comI) [Bacillus subtilis strain HMNig-2]
MNITTDIIKTILLVIVIIAAVAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDERPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=311418 D0819_RS18840 WP_153257237.1 3614897..3615346(-) (nucA/comI) [Bacillus subtilis strain HMNig-2]
GTGAACATAACGACGGACATCATAAAAACAATACTTCTCGTCATCGTCATCATAGCAGCTGTAGCTGTCGGTCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAACGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.315

100

0.973

Multiple sequence alignment