Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   D0819_RS09795 Genome accession   NZ_CP031784
Coordinates   1850648..1851394 (-) Length   248 a.a.
NCBI ID   WP_080332541.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1845648..1856394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS09770 (D0819_09790) mreC 1846054..1846926 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  D0819_RS09775 (D0819_09795) mreB 1846957..1847970 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  D0819_RS09780 (D0819_09800) radC 1848062..1848757 (-) 696 WP_003246034.1 DNA repair protein RadC -
  D0819_RS09785 (D0819_09805) maf 1848794..1849363 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  D0819_RS09790 (D0819_09810) spoIIB 1849516..1850514 (-) 999 WP_153256949.1 stage II sporulation protein SpoIIB -
  D0819_RS09795 (D0819_09815) comC 1850648..1851394 (-) 747 WP_080332541.1 A24 family peptidase Machinery gene
  D0819_RS09800 (D0819_09820) folC 1851536..1852828 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  D0819_RS09805 (D0819_09825) valS 1852888..1855530 (-) 2643 WP_153257377.1 valine--tRNA ligase -
  D0819_RS09810 (D0819_09830) - 1855978..1856169 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26437.01 Da        Isoelectric Point: 9.7944

>NTDB_id=311388 D0819_RS09795 WP_080332541.1 1850648..1851394(-) (comC) [Bacillus subtilis strain HMNig-2]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDTWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=311388 D0819_RS09795 WP_080332541.1 1850648..1851394(-) (comC) [Bacillus subtilis strain HMNig-2]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATACCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATACCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment