Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   D0819_RS08615 Genome accession   NZ_CP031784
Coordinates   1640845..1641612 (-) Length   255 a.a.
NCBI ID   WP_049141200.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1635845..1646612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS08595 (D0819_08615) ppsR 1636015..1636827 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  D0819_RS08600 (D0819_08620) ccpN 1636853..1637491 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  D0819_RS08605 (D0819_08625) glyS 1637628..1639667 (-) 2040 WP_153256920.1 glycine--tRNA ligase subunit beta -
  D0819_RS08610 (D0819_08630) glyQ 1639660..1640547 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  D0819_RS08615 (D0819_08635) recO 1640845..1641612 (-) 768 WP_049141200.1 DNA repair protein RecO Machinery gene
  D0819_RS08620 (D0819_08640) yqzL 1641649..1641792 (-) 144 WP_003230053.1 YqzL family protein -
  D0819_RS08625 (D0819_08645) era 1641940..1642845 (-) 906 WP_003230051.1 GTPase Era -
  D0819_RS08630 (D0819_08650) - 1642826..1643236 (-) 411 WP_003230049.1 cytidine deaminase -
  D0819_RS08635 (D0819_08655) unpK 1643355..1643726 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  D0819_RS08640 (D0819_08660) ybeY 1643707..1644180 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  D0819_RS08645 (D0819_08665) pgpH 1644181..1646316 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29326.05 Da        Isoelectric Point: 8.3080

>NTDB_id=311380 D0819_RS08615 WP_049141200.1 1640845..1641612(-) (recO) [Bacillus subtilis strain HMNig-2]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGAFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=311380 D0819_RS08615 WP_049141200.1 1640845..1641612(-) (recO) [Bacillus subtilis strain HMNig-2]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTGCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment