Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D0819_RS08095 Genome accession   NZ_CP031784
Coordinates   1553474..1555204 (-) Length   576 a.a.
NCBI ID   WP_032726123.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1548474..1560204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS08070 (D0819_08085) - 1548529..1548825 (-) 297 WP_014480225.1 hypothetical protein -
  D0819_RS08075 - 1549133..1549285 (+) 153 WP_014480226.1 hypothetical protein -
  D0819_RS08080 (D0819_08090) yqiG 1549358..1550476 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  D0819_RS08085 (D0819_08095) spo0A 1550940..1551743 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  D0819_RS08090 (D0819_08100) spoIVB 1552019..1553299 (-) 1281 WP_021480004.1 SpoIVB peptidase -
  D0819_RS08095 (D0819_08105) recN 1553474..1555204 (-) 1731 WP_032726123.1 DNA repair protein RecN Machinery gene
  D0819_RS08100 (D0819_08110) argR 1555241..1555690 (-) 450 WP_015384067.1 arginine repressor ArgR -
  D0819_RS08105 (D0819_08115) yqxC 1555788..1556633 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  D0819_RS08110 (D0819_08120) dxs 1556630..1558531 (-) 1902 WP_128747160.1 1-deoxy-D-xylulose-5-phosphate synthase -
  D0819_RS08115 (D0819_08125) ispA 1558706..1559596 (-) 891 WP_003230262.1 polyprenyl synthetase family protein -
  D0819_RS08120 (D0819_08130) xseB 1559586..1559840 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64564.46 Da        Isoelectric Point: 4.7697

>NTDB_id=311370 D0819_RS08095 WP_032726123.1 1553474..1555204(-) (recN) [Bacillus subtilis strain HMNig-2]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLDVC
AEQGIDVSDEMIVMRRDISTTGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLAGEIHRELKSLYMEKSTFDTEFKV
RTVSRNEEAPIVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=311370 D0819_RS08095 WP_032726123.1 1553474..1555204(-) (recN) [Bacillus subtilis strain HMNig-2]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGATGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGACCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGATGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTCAAA
ACGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGTCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGTTAGAGCTTAACGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTCGGAATGGCATCTGCGCAGCTTGAAGATATCTCTGATATTAACGAACCGCTGAAAAAACT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCGGAACGCCTGAACTATATTGAGACACGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTTTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGGTGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTTGATACGGAATTTAAGGTC
AGAACAGTGTCACGCAATGAAGAGGCGCCGATTGTAAACGGCCAGCCCGTTCAGCTGACTGAACAAGGGATTGACCTTGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCTCTGAAATCCCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAACAGGATGTGACATCGATCATTTTTGACGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAGGTGTCAATAGGTTCACAAGTGCTGTGCATTACACACCT
GCCTCAGGTGGCTGCCATGGCAGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTTA
AGCCGCTCTCTAAGCAGGAAAAGGTAGCGGAAATCGGACGCATGATTGCAGGTGTCGAAGTAACCGACTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

98.785

100

0.988

Multiple sequence alignment