Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   D0819_RS07110 Genome accession   NZ_CP031784
Coordinates   1375020..1375640 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1370020..1380640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS07070 (D0819_07080) ptsA 1371151..1371657 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  D0819_RS07075 (D0819_07085) ypqA 1371795..1372214 (+) 420 WP_015251833.1 Hsp20/alpha crystallin family protein -
  D0819_RS07080 (D0819_07090) sppG 1372235..1372612 (-) 378 WP_014477159.1 YppG family protein -
  D0819_RS07085 (D0819_07095) yppF 1372800..1372988 (+) 189 WP_003230690.1 YppF family protein -
  D0819_RS07090 (D0819_07100) yppE 1373027..1373398 (-) 372 WP_021481525.1 YppE family protein -
  D0819_RS07095 (D0819_07105) yppD 1373444..1373689 (-) 246 WP_021481526.1 DUF5446 family protein -
  D0819_RS07100 (D0819_07110) sspM 1373888..1373992 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  D0819_RS07105 (D0819_07115) yppC 1374017..1374979 (-) 963 WP_021481527.1 DUF2515 domain-containing protein -
  D0819_RS07110 (D0819_07120) recU 1375020..1375640 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  D0819_RS07115 (D0819_07125) ponA 1375662..1378412 (+) 2751 WP_072175981.1 PBP1A family penicillin-binding protein -
  D0819_RS07120 (D0819_07130) ypoC 1378487..1378981 (-) 495 WP_041849962.1 YpoC family protein -
  D0819_RS07125 (D0819_07135) nth 1378978..1379637 (-) 660 WP_009967580.1 endonuclease III -
  D0819_RS07130 (D0819_07140) dnaD 1379656..1380354 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=311368 D0819_RS07110 WP_004399067.1 1375020..1375640(+) (recU) [Bacillus subtilis strain HMNig-2]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=311368 D0819_RS07110 WP_004399067.1 1375020..1375640(+) (recU) [Bacillus subtilis strain HMNig-2]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment