Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D0819_RS05455 Genome accession   NZ_CP031784
Coordinates   1110931..1112061 (+) Length   376 a.a.
NCBI ID   WP_021481447.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1102911..1113757 1110931..1112061 within 0


Gene organization within MGE regions


Location: 1102911..1113757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS05395 (D0819_05400) yobD 1102911..1103249 (+) 339 WP_015251936.1 helix-turn-helix transcriptional regulator -
  D0819_RS05400 (D0819_05405) - 1103284..1103916 (-) 633 WP_153256791.1 hypothetical protein -
  D0819_RS05405 (D0819_05410) - 1103966..1104130 (-) 165 WP_021481433.1 hypothetical protein -
  D0819_RS05410 (D0819_05425) - 1105152..1105379 (-) 228 Protein_1071 helix-turn-helix transcriptional regulator -
  D0819_RS05415 (D0819_05430) - 1105469..1105912 (-) 444 WP_021481435.1 hypothetical protein -
  D0819_RS05420 (D0819_05435) - 1106008..1106466 (-) 459 WP_128747135.1 UPF0715 family protein -
  D0819_RS05425 (D0819_05440) - 1106764..1107054 (-) 291 WP_021481437.1 hypothetical protein -
  D0819_RS05430 (D0819_05445) - 1107057..1107353 (-) 297 WP_021481438.1 DUF2089 family protein -
  D0819_RS05435 (D0819_05450) - 1108385..1108750 (+) 366 WP_021481443.1 hypothetical protein -
  D0819_RS05440 (D0819_05455) - 1108931..1109225 (+) 295 Protein_1077 SOS response-associated peptidase family protein -
  D0819_RS05445 (D0819_05460) - 1109478..1109852 (+) 375 WP_021481445.1 YoqO family protein -
  D0819_RS05450 (D0819_05465) - 1110724..1110846 (+) 123 WP_250620812.1 phage holin -
  D0819_RS05455 (D0819_05470) rapC 1110931..1112061 (+) 1131 WP_021481447.1 tetratricopeptide repeat protein Regulator
  D0819_RS05460 - 1112051..1112194 (+) 144 WP_021481448.1 hypothetical protein -
  D0819_RS21660 (D0819_05475) - 1112348..1112548 (-) 201 WP_021481449.1 hypothetical protein -
  D0819_RS21665 - 1112771..1112940 (-) 170 Protein_1083 hypothetical protein -
  D0819_RS05470 (D0819_05485) - 1112938..1113093 (-) 156 Protein_1084 T7SS effector LXG polymorphic toxin -
  D0819_RS05475 (D0819_05490) yobM 1113194..1113751 (-) 558 WP_153256792.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=311366 D0819_RS05455 WP_021481447.1 1110931..1112061(+) (rapC) [Bacillus subtilis strain HMNig-2]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=311366 D0819_RS05455 WP_021481447.1 1110931..1112061(+) (rapC) [Bacillus subtilis strain HMNig-2]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAAGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTTACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455

Multiple sequence alignment