Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   D0819_RS02895 Genome accession   NZ_CP031784
Coordinates   525850..526314 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain HMNig-2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 520850..531314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS02875 (D0819_02885) kinA 521317..523137 (+) 1821 WP_153256728.1 sporulation histidine kinase KinA -
  D0819_RS02880 (D0819_02890) dapX 523147..524328 (-) 1182 WP_041850887.1 aminotransferase A -
  D0819_RS02885 (D0819_02895) - 524530..524691 (-) 162 WP_014476654.1 hypothetical protein -
  D0819_RS02890 (D0819_02900) cheV 524895..525806 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  D0819_RS02895 (D0819_02905) kre 525850..526314 (-) 465 WP_003232406.1 YkyB family protein Regulator
  D0819_RS02900 (D0819_02910) ykuC 526440..527732 (-) 1293 WP_014479656.1 MFS transporter -
  D0819_RS02905 (D0819_02915) ltdD 527808..528302 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  D0819_RS02910 (D0819_02920) ppeE 528359..529219 (-) 861 WP_003232400.1 metallophosphoesterase -
  D0819_RS02915 (D0819_02925) fadH 529362..530126 (+) 765 WP_041850885.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=311359 D0819_RS02895 WP_003232406.1 525850..526314(-) (kre) [Bacillus subtilis strain HMNig-2]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=311359 D0819_RS02895 WP_003232406.1 525850..526314(-) (kre) [Bacillus subtilis strain HMNig-2]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment