Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   D0819_RS00960 Genome accession   NZ_CP031784
Coordinates   166801..167379 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 161801..172379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS00940 (D0819_00940) hemAT 162312..163610 (-) 1299 WP_103803931.1 heme-based aerotactic transducer HemAT -
  D0819_RS00945 (D0819_00945) comW 163749..165278 (-) 1530 WP_064671201.1 FAD-dependent oxidoreductase -
  D0819_RS00950 (D0819_00950) yhxC 165390..166247 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  D0819_RS00955 (D0819_00955) yhzC 166275..166508 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  D0819_RS00960 (D0819_00960) comK 166801..167379 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  D0819_RS00965 (D0819_00965) yhxD 167426..168325 (-) 900 WP_153256661.1 SDR family oxidoreductase -
  D0819_RS00970 (D0819_00970) yhjA 168542..168811 (+) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  D0819_RS00975 (D0819_00975) yhjB 168854..170323 (-) 1470 WP_153256662.1 sodium:solute symporter -
  D0819_RS00980 (D0819_00980) yhjC 170320..170520 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  D0819_RS00985 (D0819_00985) - 170719..171090 (-) 372 WP_014476361.1 hypothetical protein -
  D0819_RS00990 (D0819_00990) yhjE 171242..171865 (+) 624 WP_010886465.1 VTT domain-containing protein -
  D0819_RS00995 (D0819_00995) lepB 171867..172373 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=311347 D0819_RS00960 WP_029317573.1 166801..167379(+) (comK) [Bacillus subtilis strain HMNig-2]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=311347 D0819_RS00960 WP_029317573.1 166801..167379(+) (comK) [Bacillus subtilis strain HMNig-2]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment