Detailed information NTG0031134

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: CJA_RS16875
• Genome accession: NC_010995
• Coordinates: 4193460..4194584 (-)
• Length: 374 a.a.
• NCBI ID: WP_012489075.1
• Uniprot ID: -
• Organism: Cellvibrio japonicus Ueda107
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4188460..4199584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CJA_RS16850 (CJA_3495)	trmB	4189472..4190218 (-)	747	WP_238526787.1	tRNA (guanosine(46)-N7)-methyltransferase TrmB	-
CJA_RS16855 (CJA_3496)	-	4190253..4190639 (-)	387	WP_012489071.1	DUF423 domain-containing protein	-
CJA_RS16860 (CJA_3497)	rpoH	4190722..4191582 (-)	861	WP_012489072.1	RNA polymerase sigma factor RpoH	-
CJA_RS16865 (CJA_3498)	ftsX	4191682..4192782 (-)	1101	WP_012489073.1	permease-like cell division protein FtsX	-
CJA_RS16870 (CJA_3499)	ftsE	4192779..4193447 (-)	669	WP_012489074.1	cell division ATP-binding protein FtsE	-
CJA_RS16875 (CJA_3500)	pilA	4193460..4194584 (-)	1125	WP_012489075.1	signal recognition particle-docking protein FtsY	Machinery gene
CJA_RS16880 (CJA_3501)	rsmD	4194713..4195330 (+)	618	WP_012489076.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
CJA_RS16885 (CJA_3502)	-	4195331..4195960 (-)	630	WP_012489077.1	fibronectin type III domain-containing protein	-
CJA_RS16890 (CJA_3503)	coaD	4196212..4196694 (+)	483	WP_041552641.1	pantetheine-phosphate adenylyltransferase	-
CJA_RS16895	-	4196747..4196998 (-)	252	WP_041551716.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
CJA_RS16900 (CJA_3505)	mutM	4197135..4197947 (-)	813	WP_012489080.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
CJA_RS16905 (CJA_3507)	-	4198234..4198866 (+)	633	WP_012489082.1	hypothetical protein	-

Sequence

Protein

• Length: 374 a.a.
• Molecular weight: 39889.62 Da
• Isoelectric Point: 5.5013

>NTDB_id=31134 CJA_RS16875 WP_012489075.1 4193460..4194584(-) (pilA) [Cellvibrio japonicus Ueda107]
MRPSPQEIGNKIITMFFDLFKKSPKPENPTPAAPEEQASAAGDSVVSSESTPVPEPAATTPDAEPKLGFFARIKRGLSRT
SSHFAEGLGKLFLGRKTIDEELFEELETQLLIADVGMEATSEIIDNLTSRVARKQLADSDALFAALREQLAELLRPVEQP
LVIPAANKPYVILVVGVNGVGKTTTIGKLAKRLQNDGRKVMLAAGDTFRAAAVEQLQVWGQRNNVPVIAQHSGADSASVI
FDALSAAQSRGIDVVIADTAGRLHNKNHLMDELAKVKRVMAKLDVSAPHEVLLVLDAGTGQNALNQAEQFRDAAGVTGIA
LTKLDGTAKGGVIFALSKKFGLPVRFIGVGEGIDDLQPFAAEPFINALFNVADN

Nucleotide

• Length: 1125 bp

>NTDB_id=31134 CJA_RS16875 WP_012489075.1 4193460..4194584(-) (pilA) [Cellvibrio japonicus Ueda107]
GTGCGCCCTTCCCCTCAGGAAATTGGCAACAAGATCATCACCATGTTTTTTGACCTGTTTAAGAAGTCCCCCAAACCCGA
AAATCCCACCCCTGCCGCACCGGAAGAGCAGGCGTCGGCAGCTGGCGATAGTGTTGTGTCCAGCGAGTCCACGCCAGTCC
CCGAACCGGCAGCAACGACTCCCGATGCGGAGCCCAAACTGGGATTCTTTGCGCGGATCAAACGCGGCCTCAGCCGTACC
TCCAGCCATTTTGCGGAAGGGTTGGGCAAGCTGTTCCTCGGTCGTAAAACCATTGATGAAGAACTGTTTGAAGAGTTGGA
AACCCAGTTGTTGATCGCTGATGTGGGTATGGAGGCAACCAGTGAAATCATCGATAACCTCACCAGTCGAGTGGCGCGCA
AGCAACTGGCGGATAGCGATGCCCTGTTTGCCGCCCTGCGTGAGCAGTTGGCAGAATTACTGCGCCCGGTTGAGCAGCCG
CTAGTTATTCCTGCCGCCAATAAGCCCTATGTGATTTTGGTGGTAGGGGTTAATGGTGTCGGTAAGACCACAACCATCGG
TAAACTGGCCAAACGCCTGCAAAACGACGGCAGGAAAGTCATGCTCGCGGCGGGCGATACCTTCCGCGCGGCGGCGGTCG
AGCAGTTGCAAGTCTGGGGGCAGCGCAACAATGTGCCTGTAATTGCCCAGCACTCAGGTGCGGATTCGGCATCGGTCATT
TTTGATGCCCTGAGCGCGGCCCAGTCCCGCGGCATTGATGTGGTGATTGCCGATACCGCCGGTCGCCTGCACAACAAAAA
TCATTTGATGGACGAACTGGCCAAGGTTAAACGGGTCATGGCCAAGTTGGATGTGAGTGCGCCCCATGAGGTACTGCTGG
TATTGGATGCCGGTACTGGCCAGAATGCCCTCAACCAGGCGGAACAATTCCGCGATGCAGCCGGGGTGACGGGTATTGCC
CTTACCAAGCTGGACGGTACTGCCAAGGGTGGGGTGATTTTTGCGTTGAGTAAAAAATTTGGTTTGCCGGTGCGCTTTAT
CGGGGTGGGTGAAGGTATTGATGACCTCCAGCCCTTTGCTGCCGAGCCATTTATCAATGCGCTGTTTAACGTTGCCGATA
ACTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (170-369)

• SRP54-type protein, helical bundle domain (SRP54_N) (86-150)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.731	89.572	0.481