Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E4U76_RS09945 Genome accession   NZ_CP038300
Coordinates   2020970..2021446 (-) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli O157:H7 strain SS TX 754-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2015970..2026446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4U76_RS09895 (E4U76_10150) sbmC 2016462..2016935 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  E4U76_RS09900 (E4U76_10155) yeeA 2017134..2018192 (+) 1059 WP_001202488.1 FUSC family protein -
  E4U76_RS09905 (E4U76_10160) tmaR 2018364..2018693 (+) 330 WP_000450409.1 DUF496 family protein -
  E4U76_RS09910 (E4U76_10165) - 2018794..2018976 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  E4U76_RS09915 (E4U76_10170) - 2019030..2019176 (+) 147 Protein_1955 transposase domain-containing protein -
  E4U76_RS09920 (E4U76_10175) - 2019465..2019545 (-) 81 Protein_1956 hypothetical protein -
  E4U76_RS09925 (E4U76_10180) yeeW 2019591..2019785 (-) 195 WP_000988600.1 DUF5983 family protein -
  E4U76_RS09930 (E4U76_10185) cbtA 2019782..2020155 (-) 374 Protein_1958 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  E4U76_RS09935 (E4U76_10190) cbeA 2020244..2020612 (-) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  E4U76_RS09940 (E4U76_10195) yeeT 2020686..2020907 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  E4U76_RS09945 (E4U76_10200) radC 2020970..2021446 (-) 477 WP_001186192.1 RadC family protein Machinery gene
  E4U76_RS09950 (E4U76_10205) - 2021461..2021940 (-) 480 WP_000860079.1 antirestriction protein -
  E4U76_RS09955 (E4U76_10210) - 2022022..2022843 (-) 822 WP_001234544.1 DUF932 domain-containing protein -
  E4U76_RS09960 (E4U76_10220) - 2023064..2023474 (-) 411 WP_000846711.1 hypothetical protein -
  E4U76_RS09965 (E4U76_10225) - 2023490..2024173 (-) 684 WP_000775497.1 hypothetical protein -
  E4U76_RS09970 (E4U76_10230) - 2024309..2025379 (-) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  E4U76_RS09975 (E4U76_10235) - 2025376..2026281 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=311336 E4U76_RS09945 WP_001186192.1 2020970..2021446(-) (radC) [Escherichia coli O157:H7 strain SS TX 754-1]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=311336 E4U76_RS09945 WP_001186192.1 2020970..2021446(-) (radC) [Escherichia coli O157:H7 strain SS TX 754-1]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392