Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   D0808_RS16670 Genome accession   NZ_CP031783
Coordinates   3229102..3229848 (-) Length   248 a.a.
NCBI ID   WP_134156446.1    Uniprot ID   -
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3224102..3234848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS16645 (D0808_16760) mreC 3224508..3225380 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  D0808_RS16650 (D0808_16765) mreB 3225411..3226424 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  D0808_RS16655 (D0808_16770) radC 3226516..3227211 (-) 696 WP_014480455.1 DNA repair protein RadC -
  D0808_RS16660 (D0808_16775) maf 3227248..3227817 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  D0808_RS16665 (D0808_16780) spoIIB 3227970..3228968 (-) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  D0808_RS16670 (D0808_16785) comC 3229102..3229848 (-) 747 WP_134156446.1 A24 family peptidase Machinery gene
  D0808_RS16675 (D0808_16790) folC 3229989..3231281 (-) 1293 WP_134156449.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  D0808_RS16680 (D0808_16795) valS 3231341..3233983 (-) 2643 WP_072175589.1 valine--tRNA ligase -
  D0808_RS16685 (D0808_16800) - 3234431..3234622 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26487.03 Da        Isoelectric Point: 9.7944

>NTDB_id=311328 D0808_RS16670 WP_134156446.1 3229102..3229848(-) (comC) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MLSILFIFGLFLGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFTAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILLFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=311328 D0808_RS16670 WP_134156446.1 3229102..3229848(-) (comC) [Bacillus subtilis strain MENO2 voucher National Research Centre]
ATGCTATCCATTCTTTTTATCTTCGGGCTTTTCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCTGCAGCAGAGCTTGTGACAGCG
TGTTTATTTACCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGCTTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCTGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.387

100

0.984

Multiple sequence alignment