Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   D0808_RS15080 Genome accession   NZ_CP031783
Coordinates   2953417..2954184 (-) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2948417..2959184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS15060 (D0808_15180) ppsR 2948591..2949403 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  D0808_RS15065 (D0808_15185) ccpN 2949429..2950067 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  D0808_RS15070 (D0808_15190) glyS 2950200..2952239 (-) 2040 WP_153256211.1 glycine--tRNA ligase subunit beta -
  D0808_RS15075 (D0808_15195) glyQ 2952232..2953119 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  D0808_RS15080 (D0808_15200) recO 2953417..2954184 (-) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  D0808_RS15085 (D0808_15205) yqzL 2954221..2954364 (-) 144 WP_003230053.1 YqzL family protein -
  D0808_RS15090 (D0808_15210) era 2954512..2955417 (-) 906 WP_014477370.1 GTPase Era -
  D0808_RS15095 (D0808_15215) - 2955398..2955808 (-) 411 WP_153256212.1 cytidine deaminase -
  D0808_RS15100 (D0808_15220) unpK 2955927..2956298 (-) 372 WP_046160604.1 diacylglycerol kinase family protein -
  D0808_RS15105 (D0808_15225) ybeY 2956279..2956752 (-) 474 WP_024572410.1 rRNA maturation RNase YbeY -
  D0808_RS15110 (D0808_15230) pgpH 2956753..2958888 (-) 2136 WP_153256213.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=311320 D0808_RS15080 WP_015384118.1 2953417..2954184(-) (recO) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=311320 D0808_RS15080 WP_015384118.1 2953417..2954184(-) (recO) [Bacillus subtilis strain MENO2 voucher National Research Centre]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCCGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTTTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTCTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAGCATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment