Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   D0808_RS13550 Genome accession   NZ_CP031783
Coordinates   2682822..2683442 (+) Length   206 a.a.
NCBI ID   WP_024571847.1    Uniprot ID   -
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2677822..2688442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS13510 (D0808_13605) ptsA 2678953..2679459 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  D0808_RS13515 (D0808_13610) ypqA 2679597..2680016 (+) 420 WP_153256153.1 Hsp20/alpha crystallin family protein -
  D0808_RS13520 (D0808_13615) sppG 2680037..2680414 (-) 378 WP_014477159.1 YppG family protein -
  D0808_RS13525 (D0808_13620) yppF 2680602..2680790 (+) 189 WP_003230690.1 YppF family protein -
  D0808_RS13530 (D0808_13625) yppE 2680829..2681200 (-) 372 WP_015714151.1 YppE family protein -
  D0808_RS13535 (D0808_13630) yppD 2681246..2681491 (-) 246 WP_015251831.1 YppD family protein -
  D0808_RS13540 (D0808_13635) sspM 2681690..2681794 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  D0808_RS13545 (D0808_13640) yppC 2681819..2682781 (-) 963 WP_015383945.1 DUF2515 domain-containing protein -
  D0808_RS13550 (D0808_13645) recU 2682822..2683442 (+) 621 WP_024571847.1 Holliday junction resolvase RecU Machinery gene
  D0808_RS13555 (D0808_13650) ponA 2683464..2686214 (+) 2751 WP_153256154.1 PBP1A family penicillin-binding protein -
  D0808_RS13560 (D0808_13655) ypoC 2686290..2686784 (-) 495 WP_009967579.1 YpoC family protein -
  D0808_RS13565 (D0808_13660) nth 2686781..2687440 (-) 660 WP_009967580.1 endonuclease III -
  D0808_RS13570 (D0808_13665) dnaD 2687459..2688157 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23975.09 Da        Isoelectric Point: 9.6240

>NTDB_id=311308 D0808_RS13550 WP_024571847.1 2682822..2683442(+) (recU) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MIRYPNGKTFQPKHSVSSQNSQKRSPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=311308 D0808_RS13550 WP_024571847.1 2682822..2683442(+) (recU) [Bacillus subtilis strain MENO2 voucher National Research Centre]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGTCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment