Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   D0808_RS10290 Genome accession   NZ_CP031783
Coordinates   1978967..1979542 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1973967..1984542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS10260 (D0808_10350) dapD 1974155..1974865 (+) 711 WP_153255985.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  D0808_RS10265 (D0808_10355) dapI 1974935..1976059 (+) 1125 WP_076457765.1 N-acetyldiaminopimelate deacetylase -
  D0808_RS10270 (D0808_10360) ykuS 1976121..1976366 (+) 246 WP_003232382.1 YkuS family protein -
  D0808_RS10275 (D0808_10365) mscT 1976403..1977206 (-) 804 WP_153255986.1 small-conductance mechanosensitive channel protein MscT -
  D0808_RS10280 (D0808_10370) ahpA 1977443..1977985 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  D0808_RS10285 (D0808_10375) ykuV 1978055..1978501 (+) 447 WP_024571971.1 thiol-disulfide oxidoreductase YkuV -
  D0808_RS10290 (D0808_10380) rok 1978967..1979542 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  D0808_RS10295 (D0808_10385) cse15 1979583..1980548 (-) 966 WP_153255987.1 spore protein Cse15 -
  D0808_RS10300 (D0808_10390) mobA 1980685..1981284 (+) 600 WP_153255988.1 molybdenum cofactor guanylyltransferase -
  D0808_RS10305 (D0808_10395) moeB 1981335..1982354 (+) 1020 WP_153255989.1 molybdopterin-synthase adenylyltransferase MoeB -
  D0808_RS10310 (D0808_10400) glp 1982372..1983664 (+) 1293 WP_076457763.1 gephyrin-like molybdotransferase Glp -
  D0808_RS10315 (D0808_10405) mobB 1983625..1984146 (+) 522 WP_064671333.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=311302 D0808_RS10290 WP_003232378.1 1978967..1979542(+) (rok) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=311302 D0808_RS10290 WP_003232378.1 1978967..1979542(+) (rok) [Bacillus subtilis strain MENO2 voucher National Research Centre]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCAGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment