Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   D0808_RS10185 Genome accession   NZ_CP031783
Coordinates   1963128..1963592 (-) Length   154 a.a.
NCBI ID   WP_153255982.1    Uniprot ID   -
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1958128..1968592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS10165 (D0808_10255) kinA 1958595..1960415 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  D0808_RS10170 (D0808_10260) dapX 1960425..1961606 (-) 1182 WP_121591741.1 aminotransferase A -
  D0808_RS10175 (D0808_10265) - 1961808..1961969 (-) 162 WP_003245246.1 hypothetical protein -
  D0808_RS10180 (D0808_10270) cheV 1962173..1963084 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  D0808_RS10185 (D0808_10275) kre 1963128..1963592 (-) 465 WP_153255982.1 YkyB family protein Regulator
  D0808_RS10190 (D0808_10280) ykuC 1963718..1965010 (-) 1293 WP_014479656.1 MFS transporter -
  D0808_RS10195 (D0808_10285) ltdD 1965086..1965580 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  D0808_RS10200 (D0808_10290) ppeE 1965637..1966497 (-) 861 WP_003232400.1 metallophosphoesterase -
  D0808_RS10205 (D0808_10295) fadH 1966640..1967404 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17839.64 Da        Isoelectric Point: 10.3545

>NTDB_id=311301 D0808_RS10185 WP_153255982.1 1963128..1963592(-) (kre) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MDDHAYAKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQAAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=311301 D0808_RS10185 WP_153255982.1 1963128..1963592(-) (kre) [Bacillus subtilis strain MENO2 voucher National Research Centre]
ATGGACGACCATGCATATGCGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGGCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

98.701

100

0.987

Multiple sequence alignment