Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   D0808_RS08265 Genome accession   NZ_CP031783
Coordinates   1605357..1605935 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1600357..1610935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS08245 (D0808_08335) hemAT 1600868..1602166 (-) 1299 WP_041338163.1 heme-based aerotactic transducer HemAT -
  D0808_RS08250 (D0808_08340) comW 1602305..1603834 (-) 1530 WP_153255871.1 FAD-dependent oxidoreductase -
  D0808_RS08255 (D0808_08345) yhxC 1603946..1604803 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  D0808_RS08260 (D0808_08350) yhzC 1604831..1605064 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  D0808_RS08265 (D0808_08355) comK 1605357..1605935 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  D0808_RS08270 (D0808_08360) yhxD 1605982..1606881 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  D0808_RS08275 (D0808_08365) yhjA 1607095..1607364 (+) 270 WP_153255872.1 excalibur calcium-binding domain-containing protein -
  D0808_RS08280 (D0808_08370) yhjB 1607408..1608877 (-) 1470 WP_153255873.1 sodium:solute symporter -
  D0808_RS08285 (D0808_08375) yhjC 1608874..1609074 (-) 201 WP_024571728.1 DUF3311 domain-containing protein -
  D0808_RS08290 (D0808_08380) - 1609273..1609644 (-) 372 WP_014476361.1 hypothetical protein -
  D0808_RS08295 (D0808_08385) yhjE 1609796..1610419 (+) 624 WP_010886465.1 VTT domain-containing protein -
  D0808_RS08300 (D0808_08390) lepB 1610421..1610927 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=311290 D0808_RS08265 WP_003245329.1 1605357..1605935(+) (comK) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=311290 D0808_RS08265 WP_003245329.1 1605357..1605935(+) (comK) [Bacillus subtilis strain MENO2 voucher National Research Centre]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCTTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment