Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   E3171_RS15800 Genome accession   NZ_CP038295
Coordinates   3228768..3229397 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli O55:H7 strain TB182A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3223768..3234397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3171_RS15785 (E3171_16130) helD 3224010..3226064 (-) 2055 WP_001419031.1 DNA helicase IV -
  E3171_RS15790 (E3171_16135) yccF 3226187..3226633 (+) 447 WP_001261230.1 YccF domain-containing protein -
  E3171_RS15795 (E3171_16140) yccS 3226643..3228805 (+) 2163 WP_000875023.1 YccS family putative transporter -
  E3171_RS15800 (E3171_16145) sxy/tfoX 3228768..3229397 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  E3171_RS15805 (E3171_16150) sulA 3229616..3230125 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  E3171_RS15810 (E3171_16155) ompA 3230482..3231522 (+) 1041 WP_000750416.1 porin OmpA -
  E3171_RS15815 (E3171_16160) matP 3231598..3232050 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  E3171_RS15820 (E3171_16165) ycbZ 3232236..3233996 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=311271 E3171_RS15800 WP_000839153.1 3228768..3229397(-) (sxy/tfoX) [Escherichia coli O55:H7 strain TB182A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=311271 E3171_RS15800 WP_000839153.1 3228768..3229397(-) (sxy/tfoX) [Escherichia coli O55:H7 strain TB182A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1