Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E3171_RS09355 Genome accession   NZ_CP038295
Coordinates   1975542..1976018 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli O55:H7 strain TB182A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1970542..1981018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3171_RS09305 (E3171_09455) sbmC 1971034..1971507 (+) 474 WP_001105369.1 DNA gyrase inhibitor SbmC -
  E3171_RS09310 (E3171_09460) yeeA 1971706..1972764 (+) 1059 WP_001202490.1 FUSC family protein -
  E3171_RS09315 (E3171_09465) tmaR 1972936..1973265 (+) 330 WP_000450409.1 DUF496 family protein -
  E3171_RS09320 (E3171_09470) - 1973366..1973548 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  E3171_RS09325 (E3171_09475) - 1973611..1973748 (+) 138 Protein_1842 transposase domain-containing protein -
  E3171_RS09330 (E3171_09480) - 1974037..1974129 (-) 93 Protein_1843 DUF957 domain-containing protein -
  E3171_RS09335 (E3171_09485) yeeW 1974163..1974357 (-) 195 WP_000988600.1 DUF5983 family protein -
  E3171_RS09340 (E3171_09490) cbtA 1974354..1974727 (-) 374 Protein_1845 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  E3171_RS09345 (E3171_09495) cbeA 1974816..1975184 (-) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  E3171_RS09350 (E3171_09500) yeeT 1975258..1975479 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  E3171_RS09355 (E3171_09505) radC 1975542..1976018 (-) 477 WP_001186773.1 JAB domain-containing protein Machinery gene
  E3171_RS09360 (E3171_09510) - 1976034..1976513 (-) 480 WP_000860076.1 antirestriction protein -
  E3171_RS09365 (E3171_09515) - 1976595..1977416 (-) 822 WP_001234544.1 DUF932 domain-containing protein -
  E3171_RS09370 (E3171_09525) - 1977637..1978047 (-) 411 WP_000846711.1 hypothetical protein -
  E3171_RS09375 (E3171_09530) - 1978063..1978746 (-) 684 WP_000775497.1 hypothetical protein -
  E3171_RS09380 (E3171_09535) - 1978882..1979952 (-) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  E3171_RS09385 (E3171_09540) - 1979949..1980854 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=311259 E3171_RS09355 WP_001186773.1 1975542..1976018(-) (radC) [Escherichia coli O55:H7 strain TB182A]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=311259 E3171_RS09355 WP_001186773.1 1975542..1976018(-) (radC) [Escherichia coli O55:H7 strain TB182A]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392