Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D0853_RS03150 Genome accession   NZ_CP031781
Coordinates   595407..595925 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain VPD14     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 590407..600925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0853_RS03140 (D0853_03145) gshA 593142..594710 (+) 1569 WP_005462538.1 glutamate--cysteine ligase -
  D0853_RS03145 (D0853_03150) - 594735..595340 (+) 606 WP_005480904.1 hypothetical protein -
  D0853_RS03150 (D0853_03155) luxS 595407..595925 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  D0853_RS03155 (D0853_03160) - 595986..597266 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  D0853_RS03160 (D0853_03165) - 597392..598186 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  D0853_RS03165 (D0853_03170) ffh 598399..599781 (+) 1383 WP_005462555.1 signal recognition particle protein -
  D0853_RS03170 (D0853_03175) rpsP 599991..600239 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  D0853_RS03175 (D0853_03180) rimM 600268..600816 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=311234 D0853_RS03150 WP_005462534.1 595407..595925(+) (luxS) [Vibrio parahaemolyticus strain VPD14]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=311234 D0853_RS03150 WP_005462534.1 595407..595925(+) (luxS) [Vibrio parahaemolyticus strain VPD14]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTGAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTTGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment