Detailed information NTG0311231

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D0853_RS03020
• Genome accession: NZ_CP031781
• Coordinates: 572822..573811 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain VPD14
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 567822..578811

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0853_RS02985 (D0853_02990)	ftsB	567830..568111 (+)	282	WP_005455577.1	cell division protein FtsB	-
D0853_RS02990 (D0853_02995)	ispD	568113..568817 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
D0853_RS02995 (D0853_03000)	ispF	568835..569311 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D0853_RS03000 (D0853_03005)	truD	569358..570401 (+)	1044	WP_005478539.1	tRNA pseudouridine(13) synthase TruD	-
D0853_RS03005 (D0853_03010)	surE	570401..571177 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
D0853_RS03010 (D0853_03015)	-	571177..571803 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
D0853_RS03015 (D0853_03020)	-	571818..572741 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
D0853_RS03020 (D0853_03025)	rpoS	572822..573811 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
D0853_RS03025 (D0853_03030)	mutS	573890..576451 (-)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
D0853_RS03030 (D0853_03035)	pncC	576536..577018 (+)	483	WP_005478554.1	nicotinamide-nucleotide amidase	-
D0853_RS03035 (D0853_03040)	recA	577219..578262 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=311231 D0853_RS03020 WP_005478537.1 572822..573811(+) (rpoS) [Vibrio parahaemolyticus strain VPD14]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=311231 D0853_RS03020 WP_005478537.1 572822..573811(+) (rpoS) [Vibrio parahaemolyticus strain VPD14]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTCGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851