Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E3171_RS00810 Genome accession   NZ_CP038295
Coordinates   160481..161149 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli O55:H7 strain TB182A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 155481..166149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3171_RS00780 (E3171_00810) yicC 155500..156363 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  E3171_RS00785 (E3171_00815) rph 156490..157206 (+) 717 WP_001247093.1 ribonuclease PH -
  E3171_RS00790 (E3171_00820) pyrE 157272..157913 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  E3171_RS00795 (E3171_00825) slmA 157950..158546 (-) 597 WP_000818599.1 nucleoid occlusion factor SlmA -
  E3171_RS00800 (E3171_00830) dut 158653..159111 (-) 459 WP_000976070.1 dUTP diphosphatase -
  E3171_RS00805 (E3171_00835) coaBC 159089..160309 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  E3171_RS00810 (E3171_00840) radC 160481..161149 (+) 669 WP_001297375.1 RadC family protein Machinery gene
  E3171_RS00815 (E3171_00845) rpmB 161366..161602 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  E3171_RS00820 (E3171_00850) rpmG 161623..161790 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  E3171_RS00825 (E3171_00855) mutM 161888..162697 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  E3171_RS00830 (E3171_00860) coaD 162736..163215 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  E3171_RS00835 (E3171_00865) waaA 163223..164500 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  E3171_RS00840 (E3171_00870) rfaQ 164913..165971 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=311228 E3171_RS00810 WP_001297375.1 160481..161149(+) (radC) [Escherichia coli O55:H7 strain TB182A]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=311228 E3171_RS00810 WP_001297375.1 160481..161149(+) (radC) [Escherichia coli O55:H7 strain TB182A]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGACGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment