Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CJA_RS06220 Genome accession   NC_010995
Coordinates   1479048..1480418 (+) Length   456 a.a.
NCBI ID   WP_012486905.1    Uniprot ID   B3PCF1
Organism   Cellvibrio japonicus Ueda107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1474048..1485418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJA_RS06205 (CJA_1265) - 1474498..1476816 (-) 2319 WP_012486902.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  CJA_RS06210 (CJA_1266) - 1477356..1478003 (+) 648 WP_012486903.1 STAS domain-containing protein -
  CJA_RS06215 (CJA_1267) - 1478101..1479051 (+) 951 WP_012486904.1 PDC sensor domain-containing protein -
  CJA_RS06220 (CJA_1269) radA 1479048..1480418 (+) 1371 WP_012486905.1 DNA repair protein RadA Machinery gene
  CJA_RS18605 (CJA_1268) - 1480415..1481272 (-) 858 WP_012486906.1 substrate-binding periplasmic protein -
  CJA_RS06230 (CJA_1270) - 1481286..1481669 (-) 384 WP_012486907.1 PilZ domain-containing protein -
  CJA_RS06235 (CJA_1271) - 1481685..1482062 (-) 378 WP_012486908.1 PilZ domain-containing protein -
  CJA_RS06240 (CJA_1272) - 1482291..1483211 (+) 921 WP_012486909.1 ROK family protein -
  CJA_RS06245 (CJA_1273) - 1483279..1483758 (+) 480 WP_012486910.1 DUF4442 domain-containing protein -
  CJA_RS06250 (CJA_1274) - 1483752..1484789 (+) 1038 WP_012486911.1 Gfo/Idh/MocA family oxidoreductase -
  CJA_RS06255 (CJA_1276) - 1484815..1485366 (+) 552 WP_041551199.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48891.22 Da        Isoelectric Point: 6.6892

>NTDB_id=31118 CJA_RS06220 WP_012486905.1 1479048..1480418(+) (radA) [Cellvibrio japonicus Ueda107]
MSSKQKSAFVCNECGADFKKWQGQCTECGAWNSLSEVRLGPTPGNRAAKFEGYAGGASGNPVQTLAQISLQDLPRFSSGT
GEFDRVLGGGFVPGSVVLIGGNPGAGKSTLLLQTLCNLARTMSALYVTGEESLQQVAMRAQRLGLPTDKLQMLSETSVEA
ICATAQQVQPKVMVIDSIQVMHMEDITSAPGSVSQVRESAAYLTRFAKQTGTVLILVGHVTKDGSLAGPKVLEHMIDCSI
LLEGDNDSRFRTLRGHKNRFGAVNELGVFAMTEQGMREVNNPSAIFLQRAEDVAPGSVVMVMWEGTRPLLIEIQALVDDS
HIGNPRRVAVGMDQNRLSMLLAVLHRHGGIMVGDQDVFVNVVGGVRVMETSADLAVLLAIVSSFRDQLLPQDLIVFGEVG
LSGEIRPVPSGQERLREAAKHGFKKAIVPFANASRVKELGIEVVAVKNLQQALESL

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=31118 CJA_RS06220 WP_012486905.1 1479048..1480418(+) (radA) [Cellvibrio japonicus Ueda107]
GTGAGCAGTAAACAAAAATCCGCTTTTGTCTGTAATGAATGTGGTGCCGATTTTAAAAAATGGCAGGGACAGTGTACCGA
GTGCGGTGCCTGGAATAGCCTGAGCGAGGTGCGCCTCGGCCCGACGCCGGGCAATCGCGCCGCCAAGTTTGAAGGCTATG
CCGGTGGTGCCTCCGGTAATCCGGTGCAAACCCTTGCCCAGATTTCCCTACAGGATTTACCGCGTTTCAGCAGCGGTACC
GGTGAGTTCGATCGTGTCCTGGGGGGAGGTTTTGTGCCTGGTTCTGTGGTGCTGATTGGCGGCAATCCCGGCGCGGGTAA
ATCGACATTACTGCTGCAAACCCTGTGTAATTTAGCGCGCACCATGTCCGCGCTCTATGTGACCGGTGAGGAATCCTTAC
AGCAGGTGGCCATGCGCGCGCAGCGCCTTGGCTTGCCGACGGATAAATTGCAAATGCTGAGTGAAACCAGTGTCGAAGCC
ATCTGTGCAACGGCACAACAGGTTCAGCCCAAGGTGATGGTGATTGATTCCATCCAGGTTATGCACATGGAGGATATTAC
TTCCGCACCCGGCTCCGTATCCCAGGTGCGGGAAAGTGCCGCTTATCTCACCCGTTTTGCCAAGCAAACAGGTACGGTAT
TGATCCTGGTCGGACATGTCACCAAAGACGGCTCCCTGGCCGGGCCCAAGGTACTGGAGCATATGATTGATTGCTCAATC
CTGCTGGAGGGGGATAACGACTCGCGTTTTCGCACTTTGCGTGGCCATAAAAACCGTTTTGGGGCGGTAAATGAGCTGGG
CGTATTTGCCATGACTGAGCAGGGCATGCGCGAAGTGAACAATCCCTCAGCGATTTTTTTACAGCGTGCAGAAGATGTGG
CTCCCGGTTCTGTGGTGATGGTCATGTGGGAGGGGACCCGCCCACTGTTGATTGAAATCCAGGCCCTGGTCGATGATAGC
CATATCGGCAACCCCCGAAGGGTAGCGGTGGGGATGGATCAAAATCGCTTGTCGATGTTGCTCGCTGTATTGCATCGCCA
CGGTGGCATTATGGTGGGAGACCAGGATGTCTTTGTGAATGTGGTCGGCGGTGTGCGTGTTATGGAAACCAGTGCGGATC
TGGCGGTGTTGCTGGCGATTGTCTCCAGTTTTCGCGATCAATTATTGCCGCAGGATCTGATTGTATTTGGTGAGGTGGGG
TTATCCGGGGAAATCCGTCCGGTTCCCAGCGGCCAGGAGCGTTTGCGCGAGGCAGCCAAGCACGGGTTTAAAAAAGCCAT
AGTGCCTTTTGCCAATGCGTCACGGGTGAAAGAGTTGGGAATTGAGGTTGTCGCCGTTAAAAATTTGCAACAGGCCCTGG
AGTCGCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(87-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B3PCF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.835

100

0.485
  radA Streptococcus pneumoniae Rx1

43.231

100

0.434
  radA Streptococcus pneumoniae D39

43.231

100

0.434
  radA Streptococcus pneumoniae R6

43.231

100

0.434
  radA Streptococcus pneumoniae TIGR4

43.231

100

0.434
  radA Streptococcus mitis NCTC 12261

43.013

100

0.432
  radA Streptococcus mitis SK321

42.982

100

0.43

Multiple sequence alignment