Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   E4U64_RS09460 Genome accession   NZ_CP038287
Coordinates   1956074..1957498 (-) Length   474 a.a.
NCBI ID   WP_000132546.1    Uniprot ID   -
Organism   Escherichia coli O157:H7 strain TX 376-2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1951074..1962498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4U64_RS09430 (E4U64_09655) yeeZ 1951129..1951953 (+) 825 WP_000754765.1 SDR family oxidoreductase -
  E4U64_RS09435 (E4U64_09660) yeeY 1951999..1952928 (+) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  E4U64_RS09440 (E4U64_09665) yoeI 1953143..1953205 (+) 63 WP_010723108.1 membrane protein YoeI -
  E4U64_RS09445 (E4U64_09670) plaP 1953195..1954553 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  E4U64_RS09450 (E4U64_09675) tsuA 1954732..1955790 (+) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  E4U64_RS09455 (E4U64_09680) tsuB 1955804..1956031 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  E4U64_RS09460 (E4U64_09685) sbcB 1956074..1957498 (-) 1425 WP_000132546.1 exodeoxyribonuclease I Machinery gene
  E4U64_RS09465 (E4U64_09690) - 1957680..1958858 (+) 1179 WP_001007946.1 site-specific integrase -
  E4U64_RS09470 (E4U64_09695) - 1958839..1959030 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  E4U64_RS09475 (E4U64_09700) - 1959275..1960488 (+) 1214 WP_162829202.1 IS3-like element IS1203 family transposase -
  E4U64_RS09480 (E4U64_09705) - 1960532..1960765 (-) 234 Protein_1872 hypothetical protein -
  E4U64_RS09485 (E4U64_09710) - 1960953..1961303 (-) 351 WP_000610373.1 DUF551 domain-containing protein -
  E4U64_RS09490 - 1961300..1961656 (-) 357 Protein_1874 hypothetical protein -
  E4U64_RS09495 (E4U64_09720) - 1961990..1962168 (-) 179 Protein_1875 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54397.63 Da        Isoelectric Point: 5.2440

>NTDB_id=311020 E4U64_RS09460 WP_000132546.1 1956074..1957498(-) (sbcB) [Escherichia coli O157:H7 strain TX 376-2]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=311020 E4U64_RS09460 WP_000132546.1 1956074..1957498(-) (sbcB) [Escherichia coli O157:H7 strain TX 376-2]
ATGACAGACACAGATAAGCAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAACGAA
GCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGATAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAACTGGTACATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584