Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D0S48_RS13005 Genome accession   NZ_CP031739
Coordinates   2619041..2620411 (+) Length   456 a.a.
NCBI ID   WP_151112032.1    Uniprot ID   -
Organism   Psychrobacillus sp. AK 1817     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2614041..2625411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0S48_RS12985 (D0S48_12990) - 2614279..2614752 (+) 474 WP_144540913.1 CtsR family transcriptional regulator -
  D0S48_RS12990 (D0S48_12995) - 2614768..2615310 (+) 543 WP_151112028.1 UvrB/UvrC motif-containing protein -
  D0S48_RS12995 (D0S48_13000) - 2615300..2616397 (+) 1098 WP_144540916.1 protein arginine kinase -
  D0S48_RS13000 (D0S48_13005) - 2616394..2618844 (+) 2451 WP_151112030.1 ATP-dependent Clp protease ATP-binding subunit -
  D0S48_RS13005 (D0S48_13010) radA 2619041..2620411 (+) 1371 WP_151112032.1 DNA repair protein RadA Machinery gene
  D0S48_RS13010 (D0S48_13015) - 2620652..2621743 (+) 1092 WP_144540921.1 PIN/TRAM domain-containing protein -
  D0S48_RS13015 (D0S48_13020) ispD 2621808..2622500 (+) 693 WP_151112034.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  D0S48_RS13020 (D0S48_13025) ispF 2622502..2622981 (+) 480 WP_151112036.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  D0S48_RS13025 (D0S48_13030) gltX 2623135..2624598 (+) 1464 WP_144540927.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49967.48 Da        Isoelectric Point: 7.1866

>NTDB_id=310952 D0S48_RS13005 WP_151112032.1 2619041..2620411(+) (radA) [Psychrobacillus sp. AK 1817]
MAKKKTKFMCNSCGYEAAKWMGRCPGCGEWNTMVEEVEVVSKGPRHSFQHSSGVTQKATPIISIETVEEPRVQTDLVELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLANKGERVLYISGEESIRQTKLRAERLGVTSNELYIYSETNLELINE
TIDQVSPRFVIVDSIQTVHHPEVTSAPGSVSQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMVQQGLREVLNPSELFLQERSQGAAGSAIVASMEGTRPILVEIQALVTQSSFN
YPKRMATGIDQNRISLLMAVLEKRMGLLLQTQDAYIKVAGGVKLDEPAIDLAVLVSIVSSFRDTGAAPTDCFIGEVGLTG
EVRRVSRIEQRVQEAAKLGFKRAIIPASNMGGWDYPKGLQVIGVESVNQVMKEAFS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=310952 D0S48_RS13005 WP_151112032.1 2619041..2620411(+) (radA) [Psychrobacillus sp. AK 1817]
ATGGCTAAAAAGAAAACAAAATTTATGTGTAACTCTTGCGGCTACGAGGCTGCCAAATGGATGGGTAGATGTCCGGGGTG
TGGAGAATGGAACACTATGGTGGAAGAGGTAGAGGTAGTCTCTAAGGGACCTAGACATTCTTTTCAGCATTCGTCTGGAG
TCACTCAAAAAGCAACCCCAATCATATCCATTGAAACAGTCGAGGAACCACGTGTACAAACTGATTTAGTAGAATTGAAT
CGTGTATTAGGCGGAGGAATTGTGCCAGGCTCCCTAGTTTTAATTGGGGGAGATCCAGGTATAGGTAAATCAACGCTTCT
TTTACAAGTTTCTGCTCTTCTTGCGAATAAAGGGGAAAGAGTACTCTATATATCAGGAGAAGAATCAATCCGCCAGACAA
AACTCCGAGCGGAACGTCTAGGAGTCACTTCAAATGAACTTTATATTTATTCGGAAACCAATTTAGAATTGATCAATGAA
ACGATTGATCAAGTAAGCCCACGGTTTGTAATAGTGGATTCTATCCAAACGGTTCATCATCCAGAGGTAACAAGTGCCCC
AGGAAGTGTATCCCAAGTGCGTGAAAGTACAGCTGAGCTAATGCGGATTGCGAAAACTAAAAATATTGCCATTTTCTTGG
TGGGACATGTAACTAAGGAAGGCCAAATTGCTGGTCCAAGAATACTCGAGCATATGGTAGATACTGTTTTATACTTTGAG
GGAGAACGTCATCATAATCATCGCATATTGCGCTCACAAAAAAATAGATTTGGTTCTACCAATGAGATTGCTATTTTTGA
GATGGTGCAACAGGGTTTAAGGGAAGTACTTAACCCATCTGAATTATTTTTACAGGAGCGTTCCCAGGGAGCGGCTGGAT
CTGCCATTGTTGCCTCAATGGAAGGGACAAGACCGATTTTAGTAGAGATTCAAGCGCTTGTGACACAATCGAGCTTTAAT
TATCCAAAAAGGATGGCCACAGGGATTGATCAAAATCGAATTTCTTTATTAATGGCCGTGCTAGAAAAACGCATGGGACT
GCTACTTCAAACGCAGGATGCCTACATAAAAGTTGCCGGTGGAGTAAAATTAGACGAACCTGCCATCGATTTAGCCGTCC
TAGTAAGTATCGTATCTAGTTTTAGAGATACGGGTGCTGCTCCAACCGACTGTTTTATAGGTGAGGTAGGATTAACAGGA
GAAGTAAGAAGAGTATCTAGGATTGAACAAAGAGTGCAAGAGGCAGCTAAGCTAGGCTTTAAACGAGCAATTATCCCTGC
ATCTAATATGGGGGGCTGGGATTATCCGAAGGGTCTGCAGGTTATTGGAGTAGAGTCTGTAAACCAGGTGATGAAAGAAG
CCTTTTCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.397

100

0.717
  radA Streptococcus pneumoniae Rx1

61.707

100

0.618
  radA Streptococcus pneumoniae D39

61.707

100

0.618
  radA Streptococcus pneumoniae R6

61.707

100

0.618
  radA Streptococcus pneumoniae TIGR4

61.707

100

0.618
  radA Streptococcus mitis NCTC 12261

61.707

100

0.618
  radA Streptococcus mitis SK321

61.488

100

0.616

Multiple sequence alignment