Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   D0S48_RS11460 Genome accession   NZ_CP031739
Coordinates   2320067..2321023 (-) Length   318 a.a.
NCBI ID   WP_144538308.1    Uniprot ID   -
Organism   Psychrobacillus sp. AK 1817     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2315067..2326023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0S48_RS11440 (D0S48_11460) - 2315177..2316835 (-) 1659 WP_151111740.1 hypothetical protein -
  D0S48_RS11445 (D0S48_11465) - 2317101..2318141 (-) 1041 WP_151111742.1 siderophore ABC transporter substrate-binding protein -
  D0S48_RS11450 (D0S48_11470) - 2318363..2319127 (-) 765 WP_151111744.1 ABC transporter ATP-binding protein -
  D0S48_RS11455 (D0S48_11475) - 2319124..2320080 (-) 957 WP_151111746.1 iron chelate uptake ABC transporter family permease subunit -
  D0S48_RS11460 (D0S48_11480) ceuB 2320067..2321023 (-) 957 WP_144538308.1 ABC transporter permease Machinery gene
  D0S48_RS21115 - 2321308..2321430 (-) 123 WP_255475357.1 hypothetical protein -
  D0S48_RS11465 (D0S48_11485) - 2321483..2322718 (-) 1236 WP_151111748.1 MFS transporter -
  D0S48_RS11470 (D0S48_11490) - 2323110..2323796 (-) 687 WP_151111750.1 GNAT family N-acetyltransferase -
  D0S48_RS11475 (D0S48_11495) - 2323811..2324923 (-) 1113 WP_151111752.1 mandelate racemase/muconate lactonizing enzyme family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34873.99 Da        Isoelectric Point: 9.7049

>NTDB_id=310944 D0S48_RS11460 WP_144538308.1 2320067..2321023(-) (ceuB) [Psychrobacillus sp. AK 1817]
MRLWILVVATIILSFISLFIGAIDIKPSDLLDWDSQKTQIFLMSRLPRLMAIILAGAGMGIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGVIVSMIFFTNMSYMGQIFFSFTFALIGTFIFMQLLERIKFKDVIFVPLIGIMYGNIIGAISTFLGYEADVL
QNVESFFLGSFTLVVSGRYELLYVAVPAIIIAYIYANKFTVAGMGEDFAKNLGLSYRTVLNIGLVIVAIISTTVVLTVGI
IPFLGLIVPNLVSLYLGDNLRKTIPHTIFMGAAFLLACDIISRLIVHPYEIPVNTTVAVIGSAIFLIMLFRGKAYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=310944 D0S48_RS11460 WP_144538308.1 2320067..2321023(-) (ceuB) [Psychrobacillus sp. AK 1817]
ATGAGATTATGGATATTAGTAGTAGCAACTATTATCCTATCCTTTATTTCGCTATTTATAGGAGCCATTGATATTAAACC
GAGTGATCTGCTTGATTGGGACTCCCAAAAGACCCAAATCTTTTTAATGAGTCGATTGCCACGCTTAATGGCAATTATAT
TAGCTGGTGCAGGAATGGGTATTGCGGGCTTAATTATGCAAAGCTTAAGCCGAAACAAATTCGTATCACCGACAACGGCT
GGTACACTTGATGCAGCAAAACTAGGTGTTATAGTTTCGATGATATTCTTTACAAATATGTCTTATATGGGACAGATTTT
CTTTAGTTTTACATTTGCTCTAATTGGAACTTTTATCTTTATGCAATTGCTTGAGCGTATTAAATTTAAGGATGTTATTT
TCGTACCTTTAATCGGTATTATGTACGGTAATATCATTGGGGCCATCTCAACATTCTTAGGATATGAAGCAGATGTTTTA
CAAAATGTTGAATCATTCTTTTTAGGGAGCTTTACATTAGTTGTCTCTGGGCGCTATGAATTACTATACGTAGCTGTACC
AGCGATTATTATTGCTTATATTTATGCAAATAAATTCACTGTAGCAGGTATGGGTGAGGATTTTGCAAAAAACTTAGGCC
TAAGTTATCGTACAGTGTTAAATATAGGTCTTGTCATTGTAGCGATAATTTCTACAACGGTTGTTTTAACAGTAGGTATT
ATCCCATTCTTAGGTTTAATCGTTCCTAACCTTGTTTCTTTGTATCTGGGAGATAATTTACGCAAGACAATACCGCATAC
TATTTTCATGGGTGCTGCATTCTTACTCGCATGTGATATTATAAGCCGTTTAATTGTCCATCCATATGAAATTCCGGTTA
ATACGACAGTCGCCGTAATTGGCAGTGCGATCTTCTTAATTATGTTGTTTAGGGGGAAAGCATATGCGAAAAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

99.371

0.522

Multiple sequence alignment