Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D0S48_RS01210 Genome accession   NZ_CP031739
Coordinates   239380..241083 (+) Length   567 a.a.
NCBI ID   WP_151109509.1    Uniprot ID   -
Organism   Psychrobacillus sp. AK 1817     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 234380..246083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0S48_RS01185 (D0S48_01180) xseB 234856..235077 (+) 222 WP_151109503.1 exodeoxyribonuclease VII small subunit -
  D0S48_RS01190 (D0S48_01185) - 235070..235951 (+) 882 WP_151109505.1 polyprenyl synthetase family protein -
  D0S48_RS01195 (D0S48_01190) dxs 236041..237936 (+) 1896 WP_151109507.1 1-deoxy-D-xylulose-5-phosphate synthase -
  D0S48_RS01200 (D0S48_01195) - 237933..238751 (+) 819 WP_144536040.1 TlyA family RNA methyltransferase -
  D0S48_RS01205 (D0S48_01200) ahrC 238850..239299 (+) 450 WP_144536042.1 transcriptional regulator AhrC/ArgR -
  D0S48_RS01210 (D0S48_01205) recN 239380..241083 (+) 1704 WP_151109509.1 DNA repair protein RecN Machinery gene
  D0S48_RS01215 (D0S48_01210) - 241179..242135 (+) 957 WP_151109511.1 SpoIVB peptidase S55 domain-containing protein -
  D0S48_RS01220 (D0S48_01215) spo0A 242399..243190 (+) 792 WP_144536046.1 sporulation transcription factor Spo0A -
  D0S48_RS01225 (D0S48_01220) - 243711..245282 (+) 1572 WP_151109513.1 DUF342 domain-containing protein -
  D0S48_RS01230 (D0S48_01225) - 245275..245994 (+) 720 WP_151109515.1 glycerophosphodiester phosphodiesterase family protein -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63957.79 Da        Isoelectric Point: 4.8661

>NTDB_id=310925 D0S48_RS01210 WP_151109509.1 239380..241083(+) (recN) [Psychrobacillus sp. AK 1817]
MLKELSIKNFAIIDELTVSFEEGLTVLTGETGAGKSIIIDAVHLLCGGRGSQEFIRHGAKKAELEGLFIISDPKHSVFKK
MLDVGIDKDEETIILRRDINESGKSVCRVNGKLVTIGILREIGASLIDIHGQHESQELMDDKAHIHLLDQFAGDDLKAVK
EAYRELFSKYKKWKKELATLTENEQQIAHKIDLYTFQVEEIDEAQLKRGEEESLQNEKKKLLNFHKMFDKISSSYDAILG
ESKGLDYIGSAMSDLQDISDVDENMKDLSESVSSAFYILQDAAHQLKNDLDEMEYDSNQLQIVEDRLALIQTLKRKYGAS
IEEILEYKEQIQHSLDQLVNRDEQIQKMAEKIRQIEIDLQLEANELTDKRKAASSLLSNAIMEQLQELYMEKATFAVMFH
DHPNPIYNEDGIDDLSFYISTNVGEPLKALTKIASGGELSRMMLALKSIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AGIATNSQVLCISHLSQVAAMADQHLLIRKEVSGNRTYTLLEEITDDQRAEELSRMMSGTEITTTTLKHSKELLKIAYER
KKVLRNS

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=310925 D0S48_RS01210 WP_151109509.1 239380..241083(+) (recN) [Psychrobacillus sp. AK 1817]
TTGTTAAAAGAACTTTCCATTAAAAATTTTGCGATAATAGATGAACTTACTGTAAGCTTTGAAGAAGGTTTAACTGTGCT
AACTGGTGAAACTGGAGCTGGAAAATCAATCATTATTGATGCGGTTCATCTGCTTTGCGGAGGTAGAGGATCACAGGAAT
TTATTCGACATGGCGCAAAAAAGGCAGAGCTAGAGGGACTATTTATCATTTCAGATCCAAAGCATAGCGTTTTTAAGAAA
ATGCTAGATGTTGGTATTGATAAAGATGAGGAAACAATCATTTTGAGAAGAGATATAAATGAGTCTGGAAAAAGTGTCTG
TAGAGTAAATGGGAAACTTGTAACAATTGGTATTTTAAGAGAAATTGGTGCCAGTTTAATAGATATCCATGGTCAGCATG
AAAGCCAAGAGCTAATGGATGACAAGGCACATATTCACTTGCTTGACCAATTTGCTGGAGACGACCTGAAGGCAGTAAAA
GAAGCGTATAGGGAATTATTTAGTAAATACAAAAAATGGAAAAAAGAATTGGCTACATTGACGGAAAATGAGCAGCAAAT
TGCCCATAAAATTGACCTGTACACATTTCAAGTAGAAGAAATTGATGAAGCTCAATTAAAAAGAGGAGAAGAAGAATCTC
TTCAGAATGAAAAGAAAAAGCTATTAAACTTTCATAAAATGTTTGATAAAATCAGCAGCTCATATGATGCCATTTTAGGA
GAATCTAAAGGATTAGACTATATAGGTTCTGCTATGTCTGATTTACAAGATATTTCGGATGTAGACGAGAATATGAAGGA
TTTAAGCGAAAGCGTTTCTTCGGCATTTTATATATTGCAGGACGCAGCACATCAACTTAAAAATGATTTAGATGAAATGG
AGTATGACAGCAATCAACTTCAAATTGTAGAAGATCGATTGGCTTTAATACAGACTTTAAAAAGAAAATATGGAGCCTCG
ATTGAAGAAATTCTTGAATACAAAGAACAGATTCAACATAGCTTGGACCAATTAGTCAATCGAGATGAACAAATTCAAAA
AATGGCAGAAAAAATACGTCAAATTGAAATAGATCTTCAGCTAGAGGCTAACGAGTTAACCGATAAACGGAAGGCCGCAT
CTTCCTTGTTGAGTAACGCTATTATGGAGCAGCTTCAGGAGCTTTATATGGAAAAAGCAACTTTTGCTGTTATGTTCCAT
GATCATCCTAATCCTATCTATAATGAAGATGGTATAGACGATTTATCCTTTTATATATCTACAAACGTTGGTGAACCGTT
AAAGGCTTTAACTAAAATTGCTTCAGGTGGCGAATTATCTAGAATGATGCTTGCTTTAAAAAGTATTTTTTCGAAGCATC
AAGGCATTACCTCTATTATTTTTGATGAGGTAGATACTGGTGTGAGCGGCCGAGTTGCCCAAGCGATTGCTGAAAAAATT
GCGGGCATTGCGACAAATTCACAAGTTTTGTGTATATCTCATCTTTCCCAAGTTGCAGCGATGGCTGACCAGCATTTATT
GATTAGAAAAGAAGTTTCTGGAAATCGTACCTATACGTTGCTGGAAGAAATAACGGATGACCAACGGGCCGAGGAATTAA
GCAGAATGATGTCAGGCACGGAAATCACAACTACTACTTTAAAGCACTCCAAAGAATTACTAAAAATTGCATATGAACGA
AAAAAAGTGTTAAGAAACTCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.982

100

0.533

Multiple sequence alignment