Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   DDV21_RS09820 Genome accession   NZ_CP031733
Coordinates   2051936..2052871 (-) Length   311 a.a.
NCBI ID   WP_116878458.1    Uniprot ID   A0A372KKY4
Organism   Streptococcus chenjunshii strain Z15     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2046936..2057871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV21_RS09800 (DDV21_009800) - 2047485..2048321 (-) 837 WP_116878462.1 alpha/beta hydrolase -
  DDV21_RS09805 (DDV21_009805) - 2048340..2049338 (-) 999 WP_116878461.1 NADP-dependent oxidoreductase -
  DDV21_RS09810 (DDV21_009810) - 2049422..2049853 (-) 432 WP_116878460.1 Rrf2 family transcriptional regulator -
  DDV21_RS09815 (DDV21_009815) - 2050155..2051384 (+) 1230 WP_116878459.1 IS110 family transposase -
  DDV21_RS09820 (DDV21_009820) amiF 2051936..2052871 (-) 936 WP_116878458.1 ATP-binding cassette domain-containing protein Regulator
  DDV21_RS09825 (DDV21_009825) oppD 2052864..2053916 (-) 1053 WP_116878457.1 ABC transporter ATP-binding protein Regulator
  DDV21_RS09830 (DDV21_009830) - 2053929..2054960 (-) 1032 WP_116878456.1 ABC transporter permease -
  DDV21_RS09835 (DDV21_009835) - 2054971..2055885 (-) 915 WP_116878455.1 ABC transporter permease -
  DDV21_RS09840 (DDV21_009840) - 2055996..2057645 (-) 1650 WP_116878454.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35318.30 Da        Isoelectric Point: 6.6698

>NTDB_id=310857 DDV21_RS09820 WP_116878458.1 2051936..2052871(-) (amiF) [Streptococcus chenjunshii strain Z15]
MTENRKKLVEVKNISLTFNKGKKNEVKAIDNVSFDIYEGEVLGLVGESGSGKTTVGRAILKLYDIDQGEIIFNQQKISQL
QGKQLYDFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLAKSKEERQQKVQELLSLVGLNKDHMTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLLQQLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKILEIGSADA
VYNNPIHPYTKSLLTAIPEPDPEFERQRVHQIYDPKQELDGQERQMHEITPGHFVLSTADEAEAYRETAKK

Nucleotide


Download         Length: 936 bp        

>NTDB_id=310857 DDV21_RS09820 WP_116878458.1 2051936..2052871(-) (amiF) [Streptococcus chenjunshii strain Z15]
GTGACTGAAAACCGTAAAAAGCTTGTTGAAGTCAAAAATATCTCTTTGACTTTCAATAAAGGCAAAAAAAATGAGGTCAA
AGCCATTGACAATGTCAGCTTTGATATTTATGAAGGTGAAGTATTAGGACTGGTAGGTGAGTCCGGTTCGGGAAAAACAA
CTGTTGGCCGAGCTATCCTCAAGCTTTATGACATTGACCAAGGTGAAATCATATTCAATCAGCAGAAGATTTCACAGTTA
CAAGGGAAGCAGCTCTACGATTTTCGCAAAGATGCCCAAATGATTTTTCAGGATCCTCAGGCCAGCCTTAACGGCCGTAT
GAAGATTCGTGATATCGTAGCTGAAGGACTGGATATTCATAAGCTGGCTAAGAGTAAAGAAGAACGTCAGCAAAAAGTTC
AAGAACTGCTGTCTCTTGTAGGGCTTAATAAGGATCATATGACTCGCTATCCCCATGAATTTTCTGGAGGGCAGCGTCAG
CGGATTGGCATCGCTCGGGCATTAGCAGTTGAACCAAAATTTATCATCGCTGATGAACCAATTTCAGCACTTGATGTTTC
CATACAGGCCCAAGTTGTTAACTTGCTGCAGCAGCTGCAGCATGAGCAGGGGCTGACCTATCTTTTTATTGCCCATGATT
TATCGATGGTGAAATATATTTCTGACCGTATCGGCGTTATGCATTGGGGCAAAATTTTAGAAATAGGATCAGCTGATGCT
GTTTACAACAACCCGATTCATCCTTATACCAAAAGCCTTCTGACGGCTATTCCCGAACCGGATCCGGAATTCGAACGTCA
GCGCGTTCATCAAATTTATGATCCAAAGCAGGAGTTAGATGGTCAGGAAAGGCAGATGCATGAAATTACTCCAGGTCATT
TTGTGCTTTCAACGGCTGATGAAGCAGAAGCTTATCGGGAAACTGCAAAGAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-271)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A372KKY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

55.195

99.035

0.547
  amiF Streptococcus thermophilus LMG 18311

54.87

99.035

0.543
  amiF Streptococcus salivarius strain HSISS4

54.221

99.035

0.537

Multiple sequence alignment